Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010648.1-P | Field mustard | cytosol | 82.86 | 86.02 |
| CDX90371 | Canola | cytosol | 82.86 | 86.02 |
| CDY59444 | Canola | cytosol, nucleus, peroxisome | 81.63 | 84.75 |
| CDX69376 | Canola | nucleus | 77.14 | 80.08 |
| CDY63899 | Canola | peroxisome | 75.1 | 79.65 |
| CDY56499 | Canola | cytosol | 71.02 | 79.09 |
| Bra011824.1-P | Field mustard | cytosol, nucleus, peroxisome | 75.1 | 78.63 |
| VIT_00s0665g00030.t01 | Wine grape | cytosol, nucleus, plasma membrane | 44.08 | 41.22 |
| KRH31298 | Soybean | cytosol | 39.18 | 39.02 |
| KRG97575 | Soybean | cytosol | 35.51 | 34.66 |
| Solyc04g055250.2.1 | Tomato | cytosol, golgi, peroxisome | 25.31 | 32.29 |
| PGSC0003DMT400004734 | Potato | cytosol | 23.67 | 28.29 |
Protein Annotations
| MapMan:35.2 | EntrezGene:830149 | UniProt:A0A178UYF2 | ProteinID:AEE87135.1 | ArrayExpress:AT4G39900 | EnsemblPlantsGene:AT4G39900 |
| RefSeq:AT4G39900 | TAIR:AT4G39900 | RefSeq:AT4G39900-TAIR-G | EnsemblPlants:AT4G39900.1 | TAIR:AT4G39900.1 | EMBL:AY050943 |
| EMBL:AY057651 | EMBL:AY079397 | EMBL:AY084970 | Unigene:At.2864 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_568073.1 | ProteinID:OAO98550.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR34064 |
| PANTHER:PTHR34064:SF5 | UniProt:Q93VM6 | TMHMM:TMhelix | UniParc:UPI00000AB449 | : | : |
Description
AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
Coordinates
chr4:-:18508254..18510555
Molecular Weight (calculated)
27175.3 Da
IEP (calculated)
7.503
GRAVY (calculated)
-0.298
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.