CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39900.1	KRH11076	AT4G19030.1	21798944
AT4G39900.1	KRH21197	AT4G19030.1	21798944
AT4G39900.1	KRH42923	AT4G19030.1	21798944
AT4G39900.1	KRH42926	AT4G19030.1	21798944
AT4G39900.1	KRH45251	AT4G19030.1	21798944
AT4G39900.1	KRH59035	AT4G19030.1	21798944
AT4G39900.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97575	Soybean	cytosol	88.62	86.85
VIT_00s0665g00030.t01	Wine grape	cytosol, nucleus, plasma membrane	47.15	44.27
CDY59444	Canola	cytosol, nucleus, peroxisome	40.65	42.37
Bra010648.1-P	Field mustard	cytosol	40.24	41.95
CDX90371	Canola	cytosol	40.24	41.95
CDY56499	Canola	cytosol	37.4	41.82
CDY63899	Canola	peroxisome	38.62	41.13
Bra011824.1-P	Field mustard	cytosol, nucleus, peroxisome	38.62	40.6
CDX69376	Canola	nucleus	38.62	40.25
AT4G39900.1	Thale cress	peroxisome	39.02	39.18
Solyc04g055250.2.1	Tomato	cytosol, golgi, peroxisome	30.08	38.54
PGSC0003DMT400004734	Potato	cytosol	24.8	29.76

Protein Annotations

EMBL:ACUP02007137	EMBL:BT095665	EnsemblPlants:KRH31298	EnsemblPlantsGene:GLYMA_11G240400	EntrezGene:100788279	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR34064	PANTHER:PTHR34064:SF5	ProteinID:KRH31298	ProteinID:KRH31298.1
TMHMM:TMhelix	UniParc:UPI0001B15BF7	UniProt:C6TDK5	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr11:-:33468695..33473936

Molecular Weight (calculated)

27377.4 Da

IEP (calculated)

5.952

GRAVY (calculated)

-0.260

Length

246 amino acids

Sequence
(BLAST)

001: MAVDSSFQKE HQIREFVDGS GNVAVGLKLH NKPSSDDLNR QFPLEIPPIL FEETSLPAGL HSSHAQDVYS ISVLPEENEN ANCASPLAFL SILEVPNQVK
101: NTMCLDAHIN CQNCIDFQMK NEDVYSQCIV DIPSVNGNSV SPESYEEAVE SFKTGNSPTS VLWRESSFKG GKLMQSLVNV GNPRDKAVSE KLHDLPSNRW
201: RRYKRAASFD SRKVALLFSI LSSFGTLVLI YLTLRVRQRA DGFALI

Best Arabidopsis Sequence Match ( AT4G39900.1 )
(BLAST)

001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM

Arabidopsis Description

AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.