Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G39900.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT4G39900.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT4G39900.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT4G39900.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63899 | Canola | peroxisome | 100.0 | 95.24 |
| Bra011824.1-P | Field mustard | cytosol, nucleus, peroxisome | 100.0 | 94.02 |
| CDX69376 | Canola | nucleus | 91.36 | 85.17 |
| CDX90371 | Canola | cytosol | 79.09 | 73.73 |
| CDY59444 | Canola | cytosol, nucleus, peroxisome | 77.73 | 72.46 |
| AT4G39900.1 | Thale cress | peroxisome | 79.09 | 71.02 |
| VIT_00s0665g00030.t01 | Wine grape | cytosol, nucleus, plasma membrane | 44.55 | 37.4 |
| KRH31298 | Soybean | cytosol | 41.82 | 37.4 |
| KRG97575 | Soybean | cytosol | 38.64 | 33.86 |
| Solyc04g055250.2.1 | Tomato | cytosol, golgi, peroxisome | 26.82 | 30.73 |
| PGSC0003DMT400004734 | Potato | cytosol | 25.45 | 27.32 |
Protein Annotations
| EnsemblPlants:CDY56499 | EnsemblPlantsGene:GSBRNA2T00019643001 | GO:A0A078IXA7 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34064 | PANTHER:PTHR34064:SF5 | ProteinID:CDY56499 | ProteinID:CDY56499.1 | TMHMM:TMhelix | UniParc:UPI0004EF0590 |
| UniProt:A0A078IXA7 | MapMan:35.2 | : | : | : | : |
Description
BnaAnng14340DBnaAnng14340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXA7]
Coordinates
chrLK033494:-:12696..14298
Molecular Weight (calculated)
24239.0 Da
IEP (calculated)
8.476
GRAVY (calculated)
-0.287
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGEGRKQ QFASGADGNA PLKYPTFKAT PPKPSLTDTL IDVSPLLAKE EETAFPLRDD RPLVQDVCTI SVLPDEGNPV PQCTSQFTLF SFVKALLPSK
101: NQMFIDAQLN CQKTQNRINV LLGGTDSYQS CVVDINVEKG NDGEAAGNVK SESVHMQKVL QRQASMTTDK AISDRCHDAP TNRWRRYKRA ASFDSRKIVI
201: LFSILSSVGT LILIYLTLRV
101: NQMFIDAQLN CQKTQNRINV LLGGTDSYQS CVVDINVEKG NDGEAAGNVK SESVHMQKVL QRQASMTTDK AISDRCHDAP TNRWRRYKRA ASFDSRKIVI
201: LFSILSSVGT LILIYLTLRV
001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
Arabidopsis Description
AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.