Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012567.1-P | |
| Bra013361.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G39900.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT4G39900.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56499 | Canola | cytosol | 94.02 | 100.0 |
| CDY63899 | Canola | peroxisome | 98.72 | 100.0 |
| Bra010648.1-P | Field mustard | cytosol | 78.21 | 77.54 |
| AT4G39900.1 | Thale cress | peroxisome | 78.63 | 75.1 |
| VIT_00s0665g00030.t01 | Wine grape | cytosol, nucleus, plasma membrane | 43.59 | 38.93 |
| KRH31298 | Soybean | cytosol | 40.6 | 38.62 |
| KRG97575 | Soybean | cytosol | 37.61 | 35.06 |
| Solyc04g055250.2.1 | Tomato | cytosol, golgi, peroxisome | 26.07 | 31.77 |
| PGSC0003DMT400004734 | Potato | cytosol | 23.93 | 27.32 |
Protein Annotations
| EnsemblPlants:Bra011824.1 | EnsemblPlants:Bra011824.1-P | EnsemblPlantsGene:Bra011824 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34064 | PANTHER:PTHR34064:SF5 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002546232 | UniProt:M4D5R7 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT4G39900 (E=1e-095) | unknown protein
Coordinates
chrA01:-:354034..355973
Molecular Weight (calculated)
25927.8 Da
IEP (calculated)
7.342
GRAVY (calculated)
-0.407
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGEGRKQ QFASGADGNA PLKYPTFKAT PPKPSLTDTL IDVSPLLAKE EEEEETAFPL RDDRPLVQDV CTISVLPDEG NPVPQCTSQF TLFSFVKALL
101: PSKNQMFIDA QLNCQKTQNR INVLLGGTDS YQSCVVDINV EKGNDGEAAG NVKSESVHMQ KVLQRQASMT TDKAISDRCH DAPTNRWRRY KRAASFDSRK
201: IVILFSILSS VGTLILIYLT LRVRQNGDNS FNHM
101: PSKNQMFIDA QLNCQKTQNR INVLLGGTDS YQSCVVDINV EKGNDGEAAG NVKSESVHMQ KVLQRQASMT TDKAISDRCH DAPTNRWRRY KRAASFDSRK
201: IVILFSILSS VGTLILIYLT LRVRQNGDNS FNHM
001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
Arabidopsis Description
AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.