Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- golgi 5
- plasma membrane 7
- endoplasmic reticulum 4
- vacuole 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400071510 | |
| PGSC0003DMT400073246 | |
| PGSC0003DMT400084737 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32140.1 | PGSC0003DMT400084737 | AT1G27300.1 | 21798944 |
| AT4G32140.1 | PGSC0003DMT400071510 | AT4G19030.1 | 21798944 |
| AT4G32140.1 | PGSC0003DMT400073246 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g06890.t01 | Wine grape | plasma membrane | 63.68 | 62.88 |
| KRH05344 | Soybean | plasma membrane | 57.29 | 57.29 |
| Zm00001d026442_P001 | Maize | plasma membrane | 43.48 | 57.24 |
| AT4G32140.1 | Thale cress | plasma membrane | 57.03 | 56.6 |
| Solyc08g021960.2.1 | Tomato | plasma membrane | 54.22 | 53.94 |
| Os04t0645600-01 | Rice | plasma membrane | 52.94 | 52.27 |
| GSMUA_Achr3P19860_001 | Banana | plasma membrane | 52.69 | 51.63 |
| TraesCS2B01G545100.1 | Wheat | plasma membrane | 52.43 | 51.51 |
| TraesCS2A01G516300.1 | Wheat | plasma membrane | 51.92 | 51.13 |
| TraesCS2D01G518100.1 | Wheat | plasma membrane | 51.92 | 51.01 |
| HORVU2Hr1G114380.1 | Barley | plasma membrane | 51.92 | 50.75 |
| Zm00001d002087_P001 | Maize | plasma membrane | 51.15 | 50.25 |
| EES12961 | Sorghum | plasma membrane | 50.64 | 49.75 |
| CDY23320 | Canola | plasma membrane | 56.01 | 49.55 |
| Bra040066.1-P | Field mustard | plasma membrane | 55.5 | 49.21 |
| GSMUA_Achr6P02900_001 | Banana | plasma membrane | 51.41 | 45.68 |
| KRH15685 | Soybean | golgi, nucleus, plasma membrane | 44.5 | 44.96 |
| PGSC0003DMT400045503 | Potato | plasma membrane | 25.06 | 23.22 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400062155 | EnsemblPlantsGene:PGSC0003DMG400024188 | EntrezGene:102601139 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:EamA_dom | PANTHER:PTHR23051 | PANTHER:PTHR23051:SF2 | PFAM:PF00892 | PGSC:PGSC0003DMG400024188 | RefSeq:XP_006346991.1 |
| SEG:seg | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI000296DA49 | UniProt:M1C8L4 | MapMan:24.2.1.7 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024188]
Coordinates
chr2:-:21831959..21837986
Molecular Weight (calculated)
43064.8 Da
IEP (calculated)
5.369
GRAVY (calculated)
0.530
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MVWKYNVGLG LIGVFVFIWV ASAEVTQKIF VEYKQPFAVT YLGISLMAIF LPVAVCKDRL CSLLEQSSLK KLYTDNLLLD EDSVLGVPLK LNVMHDHPEG
101: ALKDYSIAGM DYNDPKEGFP LVDINQKDEF HFLKKGDEHN SWDLVKCSLY LAPIWFATEY FSNSALANTS VASTTILTST SGLFTLLFGA VLGQDSMDIS
201: KMVAVIVSMS GVALTTVGKT WAPDEMLSVS VTAKHSIIGD VFGLLSAVCY GLFTVLLKKS TGSGEKADME RFFGYLGLFT LFGLWWLVWP LNVVGLEPKF
301: DFPSSASIVE IVLLNGFIGS FLCDYLWALS VVWTTPLVAT LGMSLTIPLA MIADMLVHGR RYSAVYILGC IQVFAGFVIA NLSDKCSCRR R
101: ALKDYSIAGM DYNDPKEGFP LVDINQKDEF HFLKKGDEHN SWDLVKCSLY LAPIWFATEY FSNSALANTS VASTTILTST SGLFTLLFGA VLGQDSMDIS
201: KMVAVIVSMS GVALTTVGKT WAPDEMLSVS VTAKHSIIGD VFGLLSAVCY GLFTVLLKKS TGSGEKADME RFFGYLGLFT LFGLWWLVWP LNVVGLEPKF
301: DFPSSASIVE IVLLNGFIGS FLCDYLWALS VVWTTPLVAT LGMSLTIPLA MIADMLVHGR RYSAVYILGC IQVFAGFVIA NLSDKCSCRR R
001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
Arabidopsis Description
AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.