Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040066.1-P | Field mustard | plasma membrane | 98.64 | 98.87 |
| AT4G32140.1 | Thale cress | plasma membrane | 77.6 | 87.06 |
| VIT_04s0008g06500.t01 | Wine grape | plasma membrane | 67.19 | 75.0 |
| KRH05190 | Soybean | plasma membrane | 65.61 | 73.79 |
| Zm00001d026442_P001 | Maize | plasma membrane | 48.87 | 72.73 |
| KRH52408 | Soybean | plasma membrane | 64.48 | 72.33 |
| KRH61738 | Soybean | plasma membrane | 64.25 | 72.26 |
| KRH15833 | Soybean | plasma membrane | 64.25 | 72.26 |
| Solyc08g021960.2.1 | Tomato | plasma membrane | 63.35 | 71.25 |
| GSMUA_Achr3P19860_001 | Banana | plasma membrane | 63.12 | 69.92 |
| Os04t0645600-01 | Rice | plasma membrane | 60.41 | 67.42 |
| EES12961 | Sorghum | plasma membrane | 59.05 | 65.58 |
| TraesCS2B01G545100.1 | Wheat | plasma membrane | 58.82 | 65.33 |
| TraesCS2A01G516300.1 | Wheat | plasma membrane | 58.6 | 65.24 |
| TraesCS2D01G518100.1 | Wheat | plasma membrane | 58.6 | 65.08 |
| HORVU2Hr1G114380.1 | Barley | plasma membrane | 58.14 | 64.25 |
| Zm00001d002087_P001 | Maize | plasma membrane | 57.69 | 64.07 |
| GSMUA_Achr6P02900_001 | Banana | plasma membrane | 63.57 | 63.86 |
| PGSC0003DMT400062155 | Potato | plasma membrane | 49.55 | 56.01 |
| CDX82733 | Canola | plasma membrane | 12.9 | 26.51 |
| CDY66751 | Canola | plasma membrane | 22.17 | 25.79 |
| CDY24649 | Canola | cytosol | 6.79 | 25.64 |
| CDY65595 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 6.79 | 25.21 |
| CDY34916 | Canola | plasma membrane | 19.23 | 25.07 |
| CDY05314 | Canola | plasma membrane | 21.72 | 23.76 |
| CDY08016 | Canola | plasma membrane | 22.62 | 23.47 |
| CDX74064 | Canola | plasma membrane | 22.62 | 23.36 |
Protein Annotations
| EnsemblPlants:CDY23320 | EnsemblPlantsGene:GSBRNA2T00021905001 | GO:A0A078GA60 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:EamA_dom | PANTHER:PTHR23051 | PANTHER:PTHR23051:SF7 | PFAM:PF00892 | ProteinID:CDY23320 | ProteinID:CDY23320.1 |
| SEG:seg | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI0004EEA715 | UniProt:A0A078GA60 | MapMan:24.2.1.7 |
Description
BnaA08g12260DBnaA08g12260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GA60]
Coordinates
chrLK032142:-:470535..473851
Molecular Weight (calculated)
48631.2 Da
IEP (calculated)
6.521
GRAVY (calculated)
0.363
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWRYKAGLF LIGTVVVIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRRSS RTNDVSSVVD VGSPLRHKVI EMGLQGTITK
101: KDSEEDFSSH EEDVRPLIGR GKEETQRHGK EVITTKQIVL YGLYLAPIWF VTEYLSNAAL ARTSVASTTV LSSTSGLFTL FIGALLGQDT LNLSKVVAVF
201: VSMAGVVMTT LGKTWAADDS QLNSSLNGQR SLVGDLFGLL SAVSYGLFTV LLKKFAGEEG EGVDVQKLFG YIGLFTLVAL WWLVWPLTAL GIEPKFTIPH
301: SAKLDEVVLA NGFVGSVLSD YFWALSVVWT TPLVATLGMS LTIPLAMVAD MMIHGRHYSA IYILGSTQVF AGFVIANISD LFSKKLGEYP NAIRECNLAL
401: EATETFSVLA LNKLDYSFRD ARIVLNMEPE NVSWIGGCRC VK
101: KDSEEDFSSH EEDVRPLIGR GKEETQRHGK EVITTKQIVL YGLYLAPIWF VTEYLSNAAL ARTSVASTTV LSSTSGLFTL FIGALLGQDT LNLSKVVAVF
201: VSMAGVVMTT LGKTWAADDS QLNSSLNGQR SLVGDLFGLL SAVSYGLFTV LLKKFAGEEG EGVDVQKLFG YIGLFTLVAL WWLVWPLTAL GIEPKFTIPH
301: SAKLDEVVLA NGFVGSVLSD YFWALSVVWT TPLVATLGMS LTIPLAMVAD MMIHGRHYSA IYILGSTQVF AGFVIANISD LFSKKLGEYP NAIRECNLAL
401: EATETFSVLA LNKLDYSFRD ARIVLNMEPE NVSWIGGCRC VK
001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
Arabidopsis Description
AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.