Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- golgi 4
- plasma membrane 6
- endoplasmic reticulum 5
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001234.1-P | Field mustard | plasma membrane | 98.83 | 98.83 |
| CDY08016 | Canola | plasma membrane | 94.86 | 95.31 |
| CDX82733 | Canola | plasma membrane | 46.03 | 91.63 |
| CDY65595 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 25.0 | 89.92 |
| AT3G07080.1 | Thale cress | plasma membrane | 85.98 | 84.02 |
| CDY05314 | Canola | plasma membrane | 79.21 | 83.91 |
| CDY66751 | Canola | plasma membrane | 73.6 | 82.89 |
| CDY34916 | Canola | plasma membrane | 64.95 | 82.01 |
| Zm00001d014470_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 42.52 | 68.16 |
| VIT_07s0005g06440.t01 | Wine grape | plasma membrane | 66.36 | 65.29 |
| CDY24649 | Canola | cytosol | 17.29 | 63.25 |
| KRH46755 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 63.78 | 62.33 |
| PGSC0003DMT400045503 | Potato | plasma membrane | 61.45 | 62.32 |
| Solyc09g061320.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane | 61.22 | 60.09 |
| GSMUA_Achr1P26240_001 | Banana | plasma membrane | 57.01 | 58.1 |
| GSMUA_Achr11P... | Banana | plasma membrane | 58.18 | 57.37 |
| KXG20650 | Sorghum | plasma membrane | 61.22 | 57.33 |
| Os06t0681700-01 | Rice | plasma membrane | 59.58 | 56.67 |
| Zm00001d036564_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 59.11 | 56.1 |
| Zm00001d014468_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 60.05 | 55.87 |
| TraesCS7B01G352500.1 | Wheat | plasma membrane | 57.01 | 53.74 |
| TraesCS7D01G441800.2 | Wheat | plasma membrane | 57.01 | 53.74 |
| TraesCS7A01G452600.1 | Wheat | plasma membrane | 56.78 | 53.52 |
| Zm00001d014469_P001 | Maize | extracellular | 18.93 | 53.29 |
| HORVU7Hr1G102150.1 | Barley | cytosol, nucleus | 57.48 | 38.5 |
| CDY23320 | Canola | plasma membrane | 23.36 | 22.62 |
Protein Annotations
| MapMan:24.2.1.7 | GO:A0A078CD10 | EnsemblPlants:CDX74064 | ProteinID:CDX74064 | ProteinID:CDX74064.1 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0022857 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00111812001 | PFAM:PF06027 | PANTHER:PTHR23051 | PANTHER:PTHR23051:SF1 |
| InterPro:SLC35_F1/F2/F6 | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI0004EE5EFC | SEG:seg | : |
Description
BnaA03g29830D
Coordinates
chrLK031800:-:1151340..1152976
Molecular Weight (calculated)
46377.6 Da
IEP (calculated)
4.710
GRAVY (calculated)
0.548
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKVWRWVL GLIYILAVAM IWIAASFVVQ SVVGAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSI LFWRSKRSHL LELVESEKDV LLGGGGVVVV
101: SDVSEGSGVV VREEEGDGSG IESGVESVEL DGSGEICAKG LDEKGRWTRM RVAKVSLVIC PFWFLAQLTF NLSLKYTTVT SNTILSSSSS LFTFLVSLIF
201: LGEKFTWLKL FSVLLCMSGT IIVSLGDSES NSTATAKNPL LGDVLSLLSA AFYAVYITLI RKKLPDDDEK NGRFSMAQLL GFLGLFNFFI FLPVALILNF
301: TKRERFNALT LKQLGLVVGK GLLDNVLSDY LWAKAVLLTT TTVATAGLTI QVPLAAIVDT LAGNKPSFTD YIGAAAVMVG FAGINIPAEM FCRSKETCIE
401: LEPGTSFTDP PQVVSDSIRV DSSETLAS
101: SDVSEGSGVV VREEEGDGSG IESGVESVEL DGSGEICAKG LDEKGRWTRM RVAKVSLVIC PFWFLAQLTF NLSLKYTTVT SNTILSSSSS LFTFLVSLIF
201: LGEKFTWLKL FSVLLCMSGT IIVSLGDSES NSTATAKNPL LGDVLSLLSA AFYAVYITLI RKKLPDDDEK NGRFSMAQLL GFLGLFNFFI FLPVALILNF
301: TKRERFNALT LKQLGLVVGK GLLDNVLSDY LWAKAVLLTT TTVATAGLTI QVPLAAIVDT LAGNKPSFTD YIGAAAVMVG FAGINIPAEM FCRSKETCIE
401: LEPGTSFTDP PQVVSDSIRV DSSETLAS
001: MSTKLWRWVL GLIYLFAVAT IWIAASFVVQ SVVEAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSL LFWRSKRSHL MELVESEKAV LLGKDVSGVK
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
Arabidopsis Description
At3g07080 [Source:UniProtKB/TrEMBL;Acc:Q9SFT8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.