CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82733	Canola	plasma membrane	98.32	54.42
Bra029620.1-P	Field mustard	cytosol, golgi, plastid	67.23	51.28
Zm00001d014469_P001	Maize	extracellular	45.38	35.53
CDY24649	Canola	cytosol	30.25	30.77
CDX74064	Canola	plasma membrane	89.92	25.0
CDY05314	Canola	plasma membrane	84.87	25.0
CDY08016	Canola	plasma membrane	89.08	24.88
Zm00001d014470_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	54.62	24.34
CDY34916	Canola	plasma membrane	68.91	24.19
AT3G07080.1	Thale cress	plasma membrane	87.39	23.74
CDY66751	Canola	plasma membrane	70.59	22.11
VIT_07s0005g06440.t01	Wine grape	plasma membrane	63.03	17.24
PGSC0003DMT400045503	Potato	plasma membrane	57.14	16.11
Solyc09g061320.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	58.82	16.05
Os06t0681700-01	Rice	plasma membrane	57.98	15.33
KRH46755	Soybean	endoplasmic reticulum, plasma membrane, vacuole	55.46	15.07
KXG20650	Sorghum	plasma membrane	56.3	14.66
Zm00001d036564_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	55.46	14.63
TraesCS7A01G452600.1	Wheat	plasma membrane	55.46	14.54
TraesCS7B01G352500.1	Wheat	plasma membrane	55.46	14.54
TraesCS7D01G441800.2	Wheat	plasma membrane	55.46	14.54
GSMUA_Achr1P26240_001	Banana	plasma membrane	50.42	14.29
GSMUA_Achr11P...	Banana	plasma membrane	52.1	14.29
Zm00001d014468_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	54.62	14.13
HORVU7Hr1G102150.1	Barley	cytosol, nucleus	55.46	10.33
CDY23320	Canola	plasma membrane	25.21	6.79

Protein Annotations

EnsemblPlants:CDY65595	EnsemblPlantsGene:GSBRNA2T00046886001	GO:A0A078JGF7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR23051	PANTHER:PTHR23051:SF1	ProteinID:CDY65595	ProteinID:CDY65595.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDB7CD	UniProt:A0A078JGF7	MapMan:24.2.1.7	:	:	:

Description

BnaAnng20690DBnaAnng20690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGF7]

Coordinates

chrLK034852:-:8124..8660

Molecular Weight (calculated)

12450.0 Da

IEP (calculated)

4.163

GRAVY (calculated)

0.524

Length

119 amino acids

Sequence
(BLAST)

001: MAQLLGLVVG KGLLDNVLSD YLWAKAVLLT TTTVASAGLT IQVLLAAIVD SLSGNKPSFT DFIGAAAVMV GFAGINIPAE VFHRSKETSI ELEPVTSFTD
101: PPQIVSDSIR VDSSETQVS

Best Arabidopsis Sequence Match ( AT3G07080.1 )
(BLAST)

001: MSTKLWRWVL GLIYLFAVAT IWIAASFVVQ SVVEAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSL LFWRSKRSHL MELVESEKAV LLGKDVSGVK
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV

Arabidopsis Description

At3g07080 [Source:UniProtKB/TrEMBL;Acc:Q9SFT8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.