Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 6
- extracellular 5
- vacuole 4
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65595 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 23.74 | 87.39 |
| CDX82733 | Canola | plasma membrane | 42.47 | 86.51 |
| CDY08016 | Canola | plasma membrane | 84.02 | 86.39 |
| CDX74064 | Canola | plasma membrane | 84.02 | 85.98 |
| Bra001234.1-P | Field mustard | plasma membrane | 83.56 | 85.51 |
| CDY66751 | Canola | plasma membrane | 72.83 | 83.95 |
| Bra040359.1-P | Field mustard | plasma membrane | 55.94 | 82.49 |
| CDY34916 | Canola | plasma membrane | 63.7 | 82.3 |
| CDY05314 | Canola | plasma membrane | 74.43 | 80.69 |
| Bra029620.1-P | Field mustard | cytosol, golgi, plastid | 27.17 | 76.28 |
| Zm00001d014470_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 41.1 | 67.42 |
| VIT_07s0005g06440.t01 | Wine grape | plasma membrane | 65.53 | 65.98 |
| PGSC0003DMT400045503 | Potato | plasma membrane | 59.82 | 62.09 |
| KRH46755 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 61.87 | 61.87 |
| CDY24649 | Canola | cytosol | 15.98 | 59.83 |
| Solyc09g061320.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane | 58.9 | 59.17 |
| GSMUA_Achr1P26240_001 | Banana | plasma membrane | 55.25 | 57.62 |
| Os06t0681700-01 | Rice | plasma membrane | 57.99 | 56.44 |
| GSMUA_Achr11P... | Banana | plasma membrane | 55.71 | 56.22 |
| KXG20650 | Sorghum | plasma membrane | 58.45 | 56.02 |
| Zm00001d036564_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 57.31 | 55.65 |
| Zm00001d014468_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 57.76 | 55.0 |
| Zm00001d014469_P001 | Maize | extracellular | 18.72 | 53.95 |
| TraesCS7B01G352500.1 | Wheat | plasma membrane | 55.25 | 53.3 |
| TraesCS7D01G441800.2 | Wheat | plasma membrane | 55.02 | 53.08 |
| TraesCS7A01G452600.1 | Wheat | plasma membrane | 55.02 | 53.08 |
| HORVU7Hr1G102150.1 | Barley | cytosol, nucleus | 55.71 | 38.18 |
| AT4G32140.1 | Thale cress | plasma membrane | 22.37 | 24.87 |
Protein Annotations
| MapMan:24.2.1.7 | EntrezGene:819894 | UniProt:A0A178VMI1 | ProteinID:AAF20238.1 | ProteinID:AEE74496.1 | ArrayExpress:AT3G07080 |
| EnsemblPlantsGene:AT3G07080 | RefSeq:AT3G07080 | TAIR:AT3G07080 | RefSeq:AT3G07080-TAIR-G | EnsemblPlants:AT3G07080.1 | TAIR:AT3G07080.1 |
| Unigene:At.40406 | EMBL:BT008641 | EMBL:BT015790 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| RefSeq:NP_187364.1 | ProteinID:OAP07004.1 | PFAM:PF06027 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR23051 |
| PANTHER:PTHR23051:SF1 | UniProt:Q9SFT8 | InterPro:SLC35_F1/F2/F6 | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI00000A900A |
| SEG:seg | : | : | : | : | : |
Description
At3g07080 [Source:UniProtKB/TrEMBL;Acc:Q9SFT8]
Coordinates
chr3:+:2241002..2243124
Molecular Weight (calculated)
47684.2 Da
IEP (calculated)
4.988
GRAVY (calculated)
0.476
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKLWRWVL GLIYLFAVAT IWIAASFVVQ SVVEAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSL LFWRSKRSHL MELVESEKAV LLGKDVSGVK
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.