Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 8
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g061320.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane | 81.04 | 78.44 |
| CDY66751 | Canola | plasma membrane | 61.14 | 67.89 |
| Zm00001d014470_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 42.89 | 67.79 |
| CDY34916 | Canola | plasma membrane | 54.27 | 67.55 |
| CDX82733 | Canola | plasma membrane | 33.41 | 65.58 |
| Bra040359.1-P | Field mustard | plasma membrane | 45.73 | 64.98 |
| CDY05314 | Canola | plasma membrane | 62.09 | 64.85 |
| VIT_07s0005g06440.t01 | Wine grape | plasma membrane | 66.11 | 64.14 |
| Bra029620.1-P | Field mustard | cytosol, golgi, plastid | 22.99 | 62.18 |
| Bra001234.1-P | Field mustard | plasma membrane | 62.56 | 61.68 |
| CDY08016 | Canola | plasma membrane | 62.09 | 61.5 |
| CDX74064 | Canola | plasma membrane | 62.32 | 61.45 |
| KRH46755 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 63.51 | 61.19 |
| AT3G07080.1 | Thale cress | plasma membrane | 62.09 | 59.82 |
| GSMUA_Achr1P26240_001 | Banana | plasma membrane | 58.06 | 58.33 |
| CDY65595 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 16.11 | 57.14 |
| Zm00001d036564_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 59.0 | 55.21 |
| KXG20650 | Sorghum | plasma membrane | 59.72 | 55.14 |
| Os06t0681700-01 | Rice | plasma membrane | 58.77 | 55.11 |
| GSMUA_Achr11P... | Banana | plasma membrane | 56.4 | 54.84 |
| CDY24649 | Canola | cytosol | 15.17 | 54.7 |
| TraesCS7B01G352500.1 | Wheat | plasma membrane | 58.53 | 54.41 |
| TraesCS7D01G441800.2 | Wheat | plasma membrane | 58.53 | 54.41 |
| Zm00001d014468_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 59.24 | 54.35 |
| TraesCS7A01G452600.1 | Wheat | plasma membrane | 58.29 | 54.19 |
| Zm00001d014469_P001 | Maize | extracellular | 17.54 | 48.68 |
| HORVU7Hr1G102150.1 | Barley | cytosol, nucleus | 58.53 | 38.65 |
| PGSC0003DMT400062155 | Potato | plasma membrane | 23.22 | 25.06 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400045503 | EnsemblPlantsGene:PGSC0003DMG400017652 | EntrezGene:102583334 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| InterPro:SLC35_F1/F2/F6 | PANTHER:PTHR23051 | PANTHER:PTHR23051:SF1 | PFAM:PF06027 | PGSC:PGSC0003DMG400017652 | SEG:seg |
| SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI00029658ED | UniProt:M1BHR9 | MapMan:24.2.1.7 | : |
Description
Membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017652]
Coordinates
chr9:-:44035914..44044883
Molecular Weight (calculated)
46206.1 Da
IEP (calculated)
4.613
GRAVY (calculated)
0.389
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDQSWRWVL GLVYIITVAS IWIAASFVVQ SVVDAGVSPF LVTYLCNSLF VVYIPLIEIV RFLEDKYGTL LFWRNNKDTS ESEETILLDD NAETSKLVVA
101: DGCEQIIDQN VDMGLDAKRR WTRSRVAKVS LLICPFWFLA QLTFNLSLKY TTVTSNTILS SSSSLFTFLV SLVFLGEVFT WVKLFSVLLC MGGTIIVSLG
201: DSKSGSSKVA SNPVLGDILS LVSAAMYAVY ITLIRKKLPD DDGKSGHASM AQFLGYLGLF NMLIFLPIPL VLNFANLEPF NTLTWKQLGL IVGKGHRCDV
301: VQSEFQEGIT KLAHENMNSE TDPRLGMFDN VLSDLLWAKA ILLTSTTVAT AGLTIQVPLA AIVDSLTGNA PPIMDYIGAA AVMVGFAGIN IPSDSCSVPE
401: EASIELENGK IQSTEQDHPS PR
101: DGCEQIIDQN VDMGLDAKRR WTRSRVAKVS LLICPFWFLA QLTFNLSLKY TTVTSNTILS SSSSLFTFLV SLVFLGEVFT WVKLFSVLLC MGGTIIVSLG
201: DSKSGSSKVA SNPVLGDILS LVSAAMYAVY ITLIRKKLPD DDGKSGHASM AQFLGYLGLF NMLIFLPIPL VLNFANLEPF NTLTWKQLGL IVGKGHRCDV
301: VQSEFQEGIT KLAHENMNSE TDPRLGMFDN VLSDLLWAKA ILLTSTTVAT AGLTIQVPLA AIVDSLTGNA PPIMDYIGAA AVMVGFAGIN IPSDSCSVPE
401: EASIELENGK IQSTEQDHPS PR
001: MSTKLWRWVL GLIYLFAVAT IWIAASFVVQ SVVEAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSL LFWRSKRSHL MELVESEKAV LLGKDVSGVK
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
Arabidopsis Description
At3g07080 [Source:UniProtKB/TrEMBL;Acc:Q9SFT8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.