Factsheet for Bra029620.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

cytosol 2
golgi 2
plasma membrane 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	golgi
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24649	Canola	cytosol	52.56	70.09
CDY65595	Canola	endoplasmic reticulum, extracellular, plasma membrane	51.28	67.23
Zm00001d014470_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	61.54	35.96
Zm00001d014469_P001	Maize	extracellular	30.13	30.92
Bra001234.1-P	Field mustard	plasma membrane	82.05	29.91
Bra040359.1-P	Field mustard	plasma membrane	55.77	29.29
AT3G07080.1	Thale cress	plasma membrane	76.28	27.17
VIT_07s0005g06440.t01	Wine grape	plasma membrane	65.38	23.45
Solyc09g061320.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	64.74	23.17
PGSC0003DMT400045503	Potato	plasma membrane	62.18	22.99
KRH46755	Soybean	endoplasmic reticulum, plasma membrane, vacuole	62.82	22.37
GSMUA_Achr1P26240_001	Banana	plasma membrane	58.97	21.9
Os06t0681700-01	Rice	plasma membrane	62.18	21.56
Zm00001d036564_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	61.54	21.29
GSMUA_Achr11P...	Banana	plasma membrane	58.97	21.2
KXG20650	Sorghum	plasma membrane	61.54	21.01
Zm00001d014468_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	61.54	20.87
TraesCS7A01G452600.1	Wheat	plasma membrane	59.62	20.48
TraesCS7B01G352500.1	Wheat	plasma membrane	59.62	20.48
TraesCS7D01G441800.2	Wheat	plasma membrane	59.62	20.48
HORVU7Hr1G102150.1	Barley	cytosol, nucleus	59.62	14.55
Bra040066.1-P	Field mustard	plasma membrane	25.0	8.84

Protein Annotations

EnsemblPlants:Bra029620.1	EnsemblPlants:Bra029620.1-P	EnsemblPlantsGene:Bra029620	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR23051	PANTHER:PTHR23051:SF1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002547FC1	UniProt:M4ELF2
MapMan:24.2.1.7	:	:	:	:	:

Description

AT3G07080 (E=2e-021) | membrane protein

Coordinates

chrA05:-:22947234..22948864

Molecular Weight (calculated)

16842.4 Da

IEP (calculated)

4.658

GRAVY (calculated)

0.346

Length

156 amino acids

Sequence
(BLAST)

001: MIVMRWYEEL KKMVKSFVSL GDSESNSTAT DKNPPLGDVL SLISAVFYAV YITLIRKKLP DDDDEKSGWF SMAQLLGFLG LLDNVLSDYL CAKAVLLTTT
101: TVASAGLTIQ VPLAAIVDSL SGNKPSFTDF IGAAAVMVGF AGINIPAEIF HRSKET

Best Arabidopsis Sequence Match ( AT3G07080.1 )
(BLAST)

001: MSTKLWRWVL GLIYLFAVAT IWIAASFVVQ SVVEAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSL LFWRSKRSHL MELVESEKAV LLGKDVSGVK
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV

Arabidopsis Description

At3g07080 [Source:UniProtKB/TrEMBL;Acc:Q9SFT8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.