CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029620.1-P	Field mustard	cytosol, golgi, plastid	70.09	52.56
CDX82733	Canola	plasma membrane	60.68	33.02
CDY65595	Canola	endoplasmic reticulum, extracellular, plasma membrane	30.77	30.25
Zm00001d014470_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	54.7	23.97
Zm00001d014469_P001	Maize	extracellular	29.91	23.03
CDY66751	Canola	plasma membrane	62.39	19.21
CDY05314	Canola	plasma membrane	65.81	19.06
CDY08016	Canola	plasma membrane	63.25	17.37
CDX74064	Canola	plasma membrane	63.25	17.29
AT3G07080.1	Thale cress	plasma membrane	59.83	15.98
GSMUA_Achr1P26240_001	Banana	plasma membrane	57.27	15.95
KRH46755	Soybean	endoplasmic reticulum, plasma membrane, vacuole	58.12	15.53
CDY34916	Canola	plasma membrane	44.44	15.34
PGSC0003DMT400045503	Potato	plasma membrane	54.7	15.17
GSMUA_Achr11P...	Banana	plasma membrane	55.56	14.98
TraesCS7A01G452600.1	Wheat	plasma membrane	56.41	14.54
TraesCS7B01G352500.1	Wheat	plasma membrane	56.41	14.54
TraesCS7D01G441800.2	Wheat	plasma membrane	56.41	14.54
Solyc09g061320.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	53.85	14.45
Os06t0681700-01	Rice	plasma membrane	55.56	14.44
VIT_07s0005g06440.t01	Wine grape	plasma membrane	52.99	14.25
KXG20650	Sorghum	plasma membrane	55.56	14.22
Zm00001d036564_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	54.7	14.19
Zm00001d014468_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	54.7	13.91
HORVU7Hr1G102150.1	Barley	cytosol, nucleus	56.41	10.33
CDY23320	Canola	plasma membrane	25.64	6.79

Protein Annotations

EnsemblPlants:CDY24649	EnsemblPlantsGene:GSBRNA2T00027025001	GO:A0A078GH84	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR23051	PANTHER:PTHR23051:SF1	ProteinID:CDY24649	ProteinID:CDY24649.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE385B	UniProt:A0A078GH84	MapMan:24.2.1.7	:	:	:

Description

BnaA05g30480DBnaA05g30480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GH84]

Coordinates

chrLK032162:-:124619..125734

Molecular Weight (calculated)

13316.3 Da

IEP (calculated)

6.789

GRAVY (calculated)

0.236

Length

117 amino acids

Sequence
(BLAST)

001: MIVMRWYEEL KKMVSTSDSK PITQINCAHV EHGNPLLGDV LSLISAVFYA VYITLIRKKL PDDDDEKSGW FSMAQLLGFL GLLNNVLSDY LWAKAVLLTT
101: TTVAWAGLTI QFHWQRL

Best Arabidopsis Sequence Match ( AT3G07080.1 )
(BLAST)

001: MSTKLWRWVL GLIYLFAVAT IWIAASFVVQ SVVEAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSL LFWRSKRSHL MELVESEKAV LLGKDVSGVK
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV

Arabidopsis Description

At3g07080 [Source:UniProtKB/TrEMBL;Acc:Q9SFT8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.