Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014470_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 43.81 | 68.91 |
| GSMUA_Achr11P... | Banana | plasma membrane | 70.24 | 67.97 |
| CDY66751 | Canola | plasma membrane | 56.9 | 62.89 |
| CDY34916 | Canola | plasma membrane | 50.24 | 62.24 |
| VIT_07s0005g06440.t01 | Wine grape | plasma membrane | 62.62 | 60.46 |
| CDX82733 | Canola | plasma membrane | 30.71 | 60.0 |
| KXG20650 | Sorghum | plasma membrane | 65.0 | 59.74 |
| Zm00001d036564_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 63.81 | 59.42 |
| KRH46755 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 61.67 | 59.13 |
| Bra029620.1-P | Field mustard | cytosol, golgi, plastid | 21.9 | 58.97 |
| Os06t0681700-01 | Rice | plasma membrane | 62.62 | 58.44 |
| CDY05314 | Canola | plasma membrane | 55.95 | 58.17 |
| PGSC0003DMT400045503 | Potato | plasma membrane | 58.33 | 58.06 |
| Bra040359.1-P | Field mustard | plasma membrane | 40.95 | 57.91 |
| Zm00001d014468_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 63.1 | 57.61 |
| Bra001234.1-P | Field mustard | plasma membrane | 58.57 | 57.48 |
| TraesCS7A01G452600.1 | Wheat | plasma membrane | 61.9 | 57.27 |
| TraesCS7B01G352500.1 | Wheat | plasma membrane | 61.9 | 57.27 |
| TraesCS7D01G441800.2 | Wheat | plasma membrane | 61.9 | 57.27 |
| CDY24649 | Canola | cytosol | 15.95 | 57.27 |
| CDX74064 | Canola | plasma membrane | 58.1 | 57.01 |
| CDY08016 | Canola | plasma membrane | 57.62 | 56.81 |
| AT3G07080.1 | Thale cress | plasma membrane | 57.62 | 55.25 |
| Solyc09g061320.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane | 57.14 | 55.05 |
| CDY65595 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 14.29 | 50.42 |
| Zm00001d014469_P001 | Maize | extracellular | 17.62 | 48.68 |
| HORVU7Hr1G102150.1 | Barley | cytosol, nucleus | 62.38 | 41.0 |
| GSMUA_Achr3P19860_001 | Banana | plasma membrane | 22.62 | 23.81 |
| GSMUA_Achr6P02900_001 | Banana | plasma membrane | 22.62 | 21.59 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P26240_001 | EnsemblPlants:GSMUA_Achr1T26240_001 | EnsemblPlantsGene:GSMUA_Achr1G26240_001 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| InterPro:SLC35_F1/F2/F6 | PANTHER:PTHR23051 | PANTHER:PTHR23051:SF1 | PFAM:PF06027 | SEG:seg | SUPFAM:SSF103481 |
| TMHMM:TMhelix | UniParc:UPI000296C3BD | UniProt:M0S381 | MapMan:24.2.1.7 | : | : |
Description
Putative Solute carrier family 35 member F5 [Source:GMGC_GENE;Acc:GSMUA_Achr1G26240_001]
Coordinates
chr1:-:21507314..21513173
Molecular Weight (calculated)
46230.0 Da
IEP (calculated)
4.688
GRAVY (calculated)
0.425
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MWLNRDSWRW ALGLICIVAV ATIWIAASYI VKSVVDSGVS PFLITYICNS LFVVLIPIVE ISRCLEDTLE NSWYWFRSKN DSDGQQSDNL ENVNLLVESC
101: HDTGPLVIMS HSQREIVSVV DSRLEDSVSS NAFTEQERYV ITDECRKQVD AKGRWTRTRV AKVSLLICPF WFFAQLTFNL SLKYTSVTSN TILSSTSSLF
201: TFLVALAFLG EKFTWVKLFS VLLCMGGTII VSLTDSISGI NAIVTNPLLG DILALVSAGL YAVYITLIRK KLSDEKEGEG QASTAQFLGF LGLFNLLIFL
301: PVSLMLDFTK LEPFHKLSWK QFGLIVGKGL LDNVLSDYLW AKAVHLTTTT VATAGLTIQV PIAAVVDSLT GNAPRLMDYV GAVAVLAGFA GINVPSDDLC
401: GAQVIQEEQE TTSTVVADER
101: HDTGPLVIMS HSQREIVSVV DSRLEDSVSS NAFTEQERYV ITDECRKQVD AKGRWTRTRV AKVSLLICPF WFFAQLTFNL SLKYTSVTSN TILSSTSSLF
201: TFLVALAFLG EKFTWVKLFS VLLCMGGTII VSLTDSISGI NAIVTNPLLG DILALVSAGL YAVYITLIRK KLSDEKEGEG QASTAQFLGF LGLFNLLIFL
301: PVSLMLDFTK LEPFHKLSWK QFGLIVGKGL LDNVLSDYLW AKAVHLTTTT VATAGLTIQV PIAAVVDSLT GNAPRLMDYV GAVAVLAGFA GINVPSDDLC
401: GAQVIQEEQE TTSTVVADER
001: MSTKLWRWVL GLIYLFAVAT IWIAASFVVQ SVVEAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSL LFWRSKRSHL MELVESEKAV LLGKDVSGVK
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
Arabidopsis Description
At3g07080 [Source:UniProtKB/TrEMBL;Acc:Q9SFT8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.