Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 6
- plasma membrane 8
- endoplasmic reticulum 5
- vacuole 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P02900_001 | Banana | plasma membrane | 83.71 | 75.91 |
| VIT_04s0008g06500.t01 | Wine grape | plasma membrane | 73.18 | 73.74 |
| AT4G32140.1 | Thale cress | plasma membrane | 71.68 | 72.59 |
| KRH52408 | Soybean | plasma membrane | 70.93 | 71.83 |
| KRH61738 | Soybean | plasma membrane | 70.18 | 71.25 |
| KRH05190 | Soybean | plasma membrane | 69.67 | 70.74 |
| KRH15833 | Soybean | plasma membrane | 69.42 | 70.48 |
| Solyc08g021960.2.1 | Tomato | plasma membrane | 68.42 | 69.47 |
| Zm00001d026442_P001 | Maize | plasma membrane | 50.63 | 68.01 |
| Os04t0645600-01 | Rice | plasma membrane | 66.67 | 67.17 |
| HORVU2Hr1G114380.1 | Barley | plasma membrane | 65.16 | 65.0 |
| TraesCS2B01G545100.1 | Wheat | plasma membrane | 64.66 | 64.82 |
| TraesCS2D01G518100.1 | Wheat | plasma membrane | 64.66 | 64.82 |
| TraesCS2A01G516300.1 | Wheat | plasma membrane | 64.41 | 64.74 |
| EES12961 | Sorghum | plasma membrane | 63.66 | 63.82 |
| Bra040066.1-P | Field mustard | plasma membrane | 70.43 | 63.72 |
| CDY23320 | Canola | plasma membrane | 69.92 | 63.12 |
| Zm00001d002087_P001 | Maize | plasma membrane | 62.66 | 62.81 |
| VIT_11s0118g00270.t01 | Wine grape | extracellular | 10.78 | 60.56 |
| PGSC0003DMT400062155 | Potato | plasma membrane | 51.63 | 52.69 |
| GSMUA_Achr1P26240_001 | Banana | plasma membrane | 23.81 | 22.62 |
| GSMUA_Achr11P... | Banana | plasma membrane | 23.56 | 21.66 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P19860_001 | EnsemblPlants:GSMUA_Achr3T19860_001 | EnsemblPlantsGene:GSMUA_Achr3G19860_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:EamA_dom | PANTHER:PTHR23051 | PANTHER:PTHR23051:SF7 | PFAM:PF00892 | SEG:seg | SignalP:SignalP-TM |
| SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI000296DE13 | UniProt:M0SG52 | MapMan:24.2.1.7 | : |
Description
Putative Uncharacterized vacuolar membrane protein YML018C [Source:GMGC_GENE;Acc:GSMUA_Achr3G19860_001]
Coordinates
chr3:+:21137513..21147047
Molecular Weight (calculated)
43835.6 Da
IEP (calculated)
7.649
GRAVY (calculated)
0.442
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MATWRYKAGL FLILAVVVIW VASAEVTQGI FTDYKQPFAI TYLGASLMVI YLPVAFVKDW LCNLLRKNSS KSARSPQIVN NSGPGINSPV KHHDVQKLVE
101: MESQVLLTKK DSDLDLSAQE EEHSLISKIR DEIDTEVLKE KRSFTAKEIA TYAFYLAPIW FVTEYLSNAA LARTSVASTT VLSSTSGLFT LFAGVLLRQD
201: TLNMAKVVAV FVSMAGVVMT TLGKTWATDE SQISSTSNGK RSLVGDLFGL LSAMTYGLFT VLLKKFAGEE GEGVDVQKLF GYVGLFTLVS LWWLVWPLTA
301: LGIEPKFTIP HSAKMEEVVL ANGFVGSVLS DYFWALCVVW TTPLVATLGM SLTIPLAMVA DMLVHGRHYS AIYILGSVQV FAGFVIANLS NRLSRLFGF
101: MESQVLLTKK DSDLDLSAQE EEHSLISKIR DEIDTEVLKE KRSFTAKEIA TYAFYLAPIW FVTEYLSNAA LARTSVASTT VLSSTSGLFT LFAGVLLRQD
201: TLNMAKVVAV FVSMAGVVMT TLGKTWATDE SQISSTSNGK RSLVGDLFGL LSAMTYGLFT VLLKKFAGEE GEGVDVQKLF GYVGLFTLVS LWWLVWPLTA
301: LGIEPKFTIP HSAKMEEVVL ANGFVGSVLS DYFWALCVVW TTPLVATLGM SLTIPLAMVA DMLVHGRHYS AIYILGSVQV FAGFVIANLS NRLSRLFGF
001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
Arabidopsis Description
AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.