CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
golgi 5
plasma membrane 7
endoplasmic reticulum 4
vacuole 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH11076
KRH21197
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH65384
KRH76090
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32140.1	KRG97393	AT1G27300.1	21798944
AT4G32140.1	KRH31520	AT1G27300.1	21798944
AT4G32140.1	KRH76090	AT1G27300.1	21798944
AT4G32140.1	KRH65384	AT3G60600.1	21798944
AT4G32140.1	KRH76164	AT3G60600.1	21798944
AT4G32140.1	KRH11076	AT4G19030.1	21798944
AT4G32140.1	KRH21197	AT4G19030.1	21798944
AT4G32140.1	KRH42923	AT4G19030.1	21798944
AT4G32140.1	KRH42926	AT4G19030.1	21798944
AT4G32140.1	KRH45251	AT4G19030.1	21798944
AT4G32140.1	KRH59035	AT4G19030.1	21798944
AT4G32140.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15833	Soybean	plasma membrane	92.88	92.88
KRH52408	Soybean	plasma membrane	82.19	81.98
KRH61738	Soybean	plasma membrane	81.93	81.93
VIT_04s0008g06500.t01	Wine grape	plasma membrane	77.86	77.27
AT4G32140.1	Thale cress	plasma membrane	75.83	75.63
Solyc08g021960.2.1	Tomato	plasma membrane	70.99	70.99
Zm00001d026442_P001	Maize	plasma membrane	53.18	70.37
GSMUA_Achr3P19860_001	Banana	plasma membrane	70.74	69.67
Bra040066.1-P	Field mustard	plasma membrane	74.05	65.99
Os04t0645600-01	Rice	plasma membrane	66.41	65.91
CDY23320	Canola	plasma membrane	73.79	65.61
TraesCS2B01G545100.1	Wheat	plasma membrane	65.65	64.82
TraesCS2D01G518100.1	Wheat	plasma membrane	65.65	64.82
TraesCS2A01G516300.1	Wheat	plasma membrane	65.39	64.74
HORVU2Hr1G114380.1	Barley	plasma membrane	65.65	64.5
GSMUA_Achr6P02900_001	Banana	plasma membrane	72.01	64.32
EES12961	Sorghum	plasma membrane	64.12	63.32
Zm00001d002087_P001	Maize	plasma membrane	63.1	62.31
KRH05344	Soybean	plasma membrane	52.93	53.2
KRH15685	Soybean	golgi, nucleus, plasma membrane	42.49	43.15
KRH46755	Soybean	endoplasmic reticulum, plasma membrane, vacuole	24.43	21.92

Protein Annotations

EntrezGene:100776833	MapMan:24.2.1.7	EMBL:ACUP02010687	InterPro:EamA_dom	EnsemblPlantsGene:GLYMA_17G212400	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	UniProt:K7MN43	EnsemblPlants:KRH05190
ProteinID:KRH05190	ProteinID:KRH05190.1	PFAM:PF00892	PANTHER:PTHR23051	PANTHER:PTHR23051:SF7	SUPFAM:SSF103481
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000233DF59	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:35156904..35162076

Molecular Weight (calculated)

42887.4 Da

IEP (calculated)

8.054

GRAVY (calculated)

0.436

Length

393 amino acids

Sequence
(BLAST)

001: MGWRYKAGLF LILTVVVIWV TSAEVTQDIF VDYKQPFAVT YLGASLMVVY LPVAFIKDWL CKLFEHRSSR SGKSAKVGDE FSVRCTSPLK GNGVQKNIEV
101: ELGGMTRKDS DANLSAHEEV KPLMAKYNDA TAIKVEKEHT TREIATYGFY IAPIWFITEY LSNAALARTS VASTTVLSST SGLFTLFIGV LMGQDTLNVS
201: KVVAVLVSIA GVVMTTLGKT WAADDAISSA SNGQRSLVGD LFGLLSAMSY GLFTVLLKKI SGEEGERVDV QKLFGYVGLF TLVALWWLIW PLSALGIEPK
301: FTIPHSARVD EVVLANGFVG SVLSDYFWAL CVVWTTPLVA TLGMSLTIPL AMMADMVIHG RHYSALYILG SIQVFAGFVI ANISDRPTKK QGL

Best Arabidopsis Sequence Match ( AT4G32140.1 )
(BLAST)

001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL

Arabidopsis Description

AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.