Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g06500.t01 | Wine grape | plasma membrane | 78.43 | 78.03 |
| Bra040066.1-P | Field mustard | plasma membrane | 87.31 | 78.0 |
| CDY23320 | Canola | plasma membrane | 87.06 | 77.6 |
| KRH05190 | Soybean | plasma membrane | 75.63 | 75.83 |
| KRH52408 | Soybean | plasma membrane | 75.63 | 75.63 |
| KRH61738 | Soybean | plasma membrane | 75.13 | 75.32 |
| KRH15833 | Soybean | plasma membrane | 74.62 | 74.81 |
| Zm00001d026442_P001 | Maize | plasma membrane | 56.35 | 74.75 |
| Solyc08g021960.2.1 | Tomato | plasma membrane | 73.1 | 73.28 |
| GSMUA_Achr3P19860_001 | Banana | plasma membrane | 72.59 | 71.68 |
| Os04t0645600-01 | Rice | plasma membrane | 70.56 | 70.2 |
| TraesCS2B01G545100.1 | Wheat | plasma membrane | 68.27 | 67.59 |
| TraesCS2D01G518100.1 | Wheat | plasma membrane | 68.02 | 67.34 |
| TraesCS2A01G516300.1 | Wheat | plasma membrane | 67.77 | 67.25 |
| EES12961 | Sorghum | plasma membrane | 67.77 | 67.09 |
| HORVU2Hr1G114380.1 | Barley | plasma membrane | 67.51 | 66.5 |
| Zm00001d002087_P001 | Maize | plasma membrane | 67.01 | 66.33 |
| GSMUA_Achr6P02900_001 | Banana | plasma membrane | 72.08 | 64.55 |
| PGSC0003DMT400062155 | Potato | plasma membrane | 56.6 | 57.03 |
| AT3G07080.1 | Thale cress | plasma membrane | 24.87 | 22.37 |
Protein Annotations
| MapMan:24.2.1.7 | EntrezGene:829346 | ProteinID:AEE86010.1 | ArrayExpress:AT4G32140 | EnsemblPlantsGene:AT4G32140 | RefSeq:AT4G32140 |
| TAIR:AT4G32140 | RefSeq:AT4G32140-TAIR-G | EnsemblPlants:AT4G32140.1 | TAIR:AT4G32140.1 | EMBL:AY057538 | EMBL:AY113057 |
| ProteinID:CAA16575.1 | ProteinID:CAB79932.1 | ncoils:Coil | InterPro:EamA_dom | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_194941.1 | UniProt:O49378 | PFAM:PF00892 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR23051 | PANTHER:PTHR23051:SF7 | SUPFAM:SSF103481 | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI000009F7B6 | SEG:seg | : | : | : |
Description
AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
Coordinates
chr4:-:15522788..15525536
Molecular Weight (calculated)
43404.1 Da
IEP (calculated)
6.525
GRAVY (calculated)
0.399
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.