Factsheet for TraesCS2B01G545100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G346700.1
TraesCS2A01G368500.1
TraesCS2B01G365000.1
TraesCS2B01G385700.2
TraesCS2D01G345400.1
TraesCS2D01G365300.2
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32140.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT4G32140.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT4G32140.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT4G32140.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT4G32140.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT4G32140.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT4G32140.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT4G32140.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT4G32140.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT4G32140.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT4G32140.1	TraesCS7D01G296400.1	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G518100.1	Wheat	plasma membrane	99.5	99.5
TraesCS2A01G516300.1	Wheat	plasma membrane	99.0	99.24
HORVU2Hr1G114380.1	Barley	plasma membrane	98.24	97.75
Os04t0645600-01	Rice	plasma membrane	87.19	87.63
Zm00001d026442_P001	Maize	plasma membrane	62.81	84.18
EES12961	Sorghum	plasma membrane	84.17	84.17
Zm00001d002087_P001	Maize	plasma membrane	82.41	82.41
VIT_04s0008g06500.t01	Wine grape	plasma membrane	69.1	69.44
KRH52408	Soybean	plasma membrane	67.84	68.53
AT4G32140.1	Thale cress	plasma membrane	67.59	68.27
KRH61738	Soybean	plasma membrane	67.34	68.19
Solyc08g021960.2.1	Tomato	plasma membrane	65.83	66.67
KRH15833	Soybean	plasma membrane	65.33	66.16
KRH05190	Soybean	plasma membrane	64.82	65.65
GSMUA_Achr3P19860_001	Banana	plasma membrane	64.82	64.66
GSMUA_Achr6P02900_001	Banana	plasma membrane	66.58	60.23
Bra040066.1-P	Field mustard	plasma membrane	65.33	58.96
CDY23320	Canola	plasma membrane	65.33	58.82
VIT_11s0118g00270.t01	Wine grape	extracellular	10.05	56.34
PGSC0003DMT400062155	Potato	plasma membrane	51.51	52.43
TraesCS7B01G352500.1	Wheat	plasma membrane	25.13	22.03

Protein Annotations

EnsemblPlants:TraesCS2B01G545100.1	EnsemblPlantsGene:TraesCS2B01G545100	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:EamA_dom
PANTHER:PTHR23051	PANTHER:PTHR23051:SF7	PFAM:PF00892	SEG:seg	SignalP:SignalP-TM	SUPFAM:SSF103481
TMHMM:TMhelix	MapMan:24.2.1.7	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:742078070..742081761

Molecular Weight (calculated)

43146.2 Da

IEP (calculated)

7.442

GRAVY (calculated)

0.561

Length

398 amino acids

Sequence
(BLAST)

001: MGPNLKYRAG LVLIVAVVLI WVTSAEVTQG IFANYKQPFA ITYLGASLMV IYIPLAFLKD FIYRLLRRNS GSSKASKIAS KSSFGGSAPL KNGEFHKMLE
101: MEPQKTVVIK ITDVDLPVLE ETKPLICGIG ECEGEVLKEQ QLSTKEIAIY GLYLCPIWFV TEYLSNAALA RTSVASTTVL SSTSGLFTLF IGVLLGQDSI
201: NAAKVIAVFV SMAGVAMTTM GQTWATDESE VSNSGATQRT LLGDMFGLMS AMSYGLFTVL LKKFAGGEGS EKVDVQKLFG FLGLFSLCLL WWLVWPLTAL
301: GIEPKFTMPH SAKVDEVVLA NGLIGSVLSD YFWALSVVWT NPLVATLGMS LTIPLAMVAD MVIHGRHYSA VYIFGSVQVF SGFVIANLAD RVSRFLGL

Best Arabidopsis Sequence Match ( AT4G32140.1 )
(BLAST)

001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL

Arabidopsis Description

AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.