Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 7
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 | |
| Solyc05g015640.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32140.1 | Solyc05g015640.2.1 | AT1G27300.1 | 21798944 |
| AT4G32140.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT4G32140.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g06500.t01 | Wine grape | plasma membrane | 75.32 | 74.75 |
| AT4G32140.1 | Thale cress | plasma membrane | 73.28 | 73.1 |
| KRH52408 | Soybean | plasma membrane | 72.52 | 72.33 |
| KRH61738 | Soybean | plasma membrane | 71.76 | 71.76 |
| KRH05190 | Soybean | plasma membrane | 70.99 | 70.99 |
| Zm00001d026442_P001 | Maize | plasma membrane | 53.44 | 70.71 |
| KRH15833 | Soybean | plasma membrane | 70.23 | 70.23 |
| GSMUA_Achr3P19860_001 | Banana | plasma membrane | 69.47 | 68.42 |
| TraesCS2A01G516300.1 | Wheat | plasma membrane | 66.92 | 66.25 |
| Os04t0645600-01 | Rice | plasma membrane | 66.67 | 66.16 |
| TraesCS2B01G545100.1 | Wheat | plasma membrane | 66.67 | 65.83 |
| TraesCS2D01G518100.1 | Wheat | plasma membrane | 66.67 | 65.83 |
| EES12961 | Sorghum | plasma membrane | 66.41 | 65.58 |
| HORVU2Hr1G114380.1 | Barley | plasma membrane | 66.67 | 65.5 |
| Zm00001d002087_P001 | Maize | plasma membrane | 65.9 | 65.08 |
| Bra040066.1-P | Field mustard | plasma membrane | 71.5 | 63.72 |
| CDY23320 | Canola | plasma membrane | 71.25 | 63.35 |
| GSMUA_Achr6P02900_001 | Banana | plasma membrane | 69.47 | 62.05 |
| PGSC0003DMT400062155 | Potato | plasma membrane | 53.94 | 54.22 |
| Solyc09g061320.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane | 23.66 | 21.33 |
Protein Annotations
| EnsemblPlants:Solyc08g021960.2.1 | EnsemblPlantsGene:Solyc08g021960.2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:EamA_dom | PANTHER:PTHR23051 | PANTHER:PTHR23051:SF7 | PFAM:PF00892 | SEG:seg |
| SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI000276BA85 | UniProt:K4CJL6 | MapMan:24.2.1.7 | : |
Description
No Description!
Coordinates
chr8:+:34103722..34115364
Molecular Weight (calculated)
43191.8 Da
IEP (calculated)
7.098
GRAVY (calculated)
0.352
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MTWKYKAGLC LISAVVVIWV TSAEVTQGIF SEYRQPFAIT YLGASLLVIY LPVAFLKDRI CDFLKRRPSR TDKNTGNESY MRHSSPLKHT VQKVFEIEIQ
101: KSMDRKDSGE NISAEEEGKP LVAKCNGNFD DLKNGKEITT WQIARYGFFL APLWFITEYL SNAALEHTSV ASTTVLSSTS GLFTLFVGVI LGEDSLNMAK
201: VVAVFVSMSG VVMTTLGKTW ATDESQLNSS SSGERSLLGD LFGLLSAMSY GLFTVLLKKF AGEEGKGIDM QKLFGYIGLC TLVTMWWLVW PLTALGIEPK
301: FTIPHSAKLD EVVLANGLVG SVLSDYFWAL CVVWTTPLVA TLGMSLTIPL AMVADMVIHG RHYSAIYILG SAQVFAGFVI ANIADRISKL MGL
101: KSMDRKDSGE NISAEEEGKP LVAKCNGNFD DLKNGKEITT WQIARYGFFL APLWFITEYL SNAALEHTSV ASTTVLSSTS GLFTLFVGVI LGEDSLNMAK
201: VVAVFVSMSG VVMTTLGKTW ATDESQLNSS SSGERSLLGD LFGLLSAMSY GLFTVLLKKF AGEEGKGIDM QKLFGYIGLC TLVTMWWLVW PLTALGIEPK
301: FTIPHSAKLD EVVLANGLVG SVLSDYFWAL CVVWTTPLVA TLGMSLTIPL AMVADMVIHG RHYSAIYILG SAQVFAGFVI ANIADRISKL MGL
001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
Arabidopsis Description
AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.