Factsheet for GSMUA_Achr6P02900_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
golgi 6
plasma membrane 8
endoplasmic reticulum 5
vacuole 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32140.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G32140.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G32140.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT4G32140.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT4G32140.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT4G32140.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P19860_001	Banana	plasma membrane	75.91	83.71
VIT_04s0008g06500.t01	Wine grape	plasma membrane	67.05	74.49
KRH61738	Soybean	plasma membrane	65.45	73.28
KRH52408	Soybean	plasma membrane	65.45	73.1
AT4G32140.1	Thale cress	plasma membrane	64.55	72.08
KRH05190	Soybean	plasma membrane	64.32	72.01
KRH15833	Soybean	plasma membrane	63.86	71.5
Solyc08g021960.2.1	Tomato	plasma membrane	62.05	69.47
Zm00001d026442_P001	Maize	plasma membrane	46.36	68.69
Os04t0645600-01	Rice	plasma membrane	60.91	67.68
TraesCS2B01G545100.1	Wheat	plasma membrane	60.23	66.58
TraesCS2D01G518100.1	Wheat	plasma membrane	60.23	66.58
TraesCS2A01G516300.1	Wheat	plasma membrane	60.0	66.5
HORVU2Hr1G114380.1	Barley	plasma membrane	60.23	66.25
Zm00001d002087_P001	Maize	plasma membrane	58.41	64.57
EES12961	Sorghum	plasma membrane	58.18	64.32
Bra040066.1-P	Field mustard	plasma membrane	64.09	63.95
CDY23320	Canola	plasma membrane	63.86	63.57
VIT_11s0118g00270.t01	Wine grape	extracellular	9.55	59.15
PGSC0003DMT400062155	Potato	plasma membrane	45.68	51.41
GSMUA_Achr1P26240_001	Banana	plasma membrane	21.59	22.62
GSMUA_Achr11P...	Banana	plasma membrane	21.14	21.43

Protein Annotations

EnsemblPlants:GSMUA_Achr6P02900_001	EnsemblPlants:GSMUA_Achr6T02900_001	EnsemblPlantsGene:GSMUA_Achr6G02900_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:EamA_dom	PANTHER:PTHR23051	PANTHER:PTHR23051:SF7	PFAM:PF00892	SEG:seg	SignalP:SignalP-TM
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI00029487AF	UniProt:M0T3N8	MapMan:24.2.1.7	:

Description

Putative Uncharacterized vacuolar membrane protein YML018C [Source:GMGC_GENE;Acc:GSMUA_Achr6G02900_001]

Coordinates

chr6:-:1976027..1984159

Molecular Weight (calculated)

48559.3 Da

IEP (calculated)

7.898

GRAVY (calculated)

0.404

Length

440 amino acids

Sequence
(BLAST)

001: MASWRYKAGL FLILAVVVIW VTSAEVTQGI FTDYKQPFAV TYLGASLMVV YLPVAFIKDW ICNLLRKHSS RSGRSTQIVS KQSSGSPLKN SGIQKMVEME
101: SQSLLTRKDS EVDLSAQEEE QSFISEIRDE VGAEVLKERR SFTTKEVIIY GFYLAPIWFV TEYLSNAALA RTSVASTTVL SSTSGLFTLF VGVLLRQDSL
201: NMAKVVAVFV SMAGVVMTTL GKTWAADESQ MSTTSNGKRS LAGDLFGLLS AMTYGLFTVL LKKFAGEEGE GVDVQKLFGY VGLFTLVALW WLVWPLTALG
301: IEPKFTIPHS AKMEEVVLAN GFVGSVLSDY FWALCVVWTT PLVATLGMSL TIPLAMVADM VIHGRHYSAV YILGSAQWNN LNPLCIYLNL GFTQDHHIDI
401: QMISQFIPKR TLSWRTGNFK LPACVTFTCH VALSAGFVLL

Best Arabidopsis Sequence Match ( AT4G32140.1 )
(BLAST)

001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL

Arabidopsis Description

AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.