Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0509600-01 | |
| Os02t0643000-01 | |
| Os04t0534400-01 | |
| Os08t0156700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32140.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
| AT4G32140.1 | Os02t0643000-01 | AT3G60600.1 | 21798944 |
| AT4G32140.1 | Os04t0534400-01 | AT3G60600.1 | 21798944 |
| AT4G32140.1 | Os08t0156700-01 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G516300.1 | Wheat | plasma membrane | 87.88 | 87.66 |
| TraesCS2D01G518100.1 | Wheat | plasma membrane | 87.63 | 87.19 |
| TraesCS2B01G545100.1 | Wheat | plasma membrane | 87.63 | 87.19 |
| HORVU2Hr1G114380.1 | Barley | plasma membrane | 87.63 | 86.75 |
| EES12961 | Sorghum | plasma membrane | 85.86 | 85.43 |
| Zm00001d026442_P001 | Maize | plasma membrane | 63.89 | 85.19 |
| Zm00001d002087_P001 | Maize | plasma membrane | 84.34 | 83.92 |
| AT4G32140.1 | Thale cress | plasma membrane | 70.2 | 70.56 |
| VIT_04s0008g06500.t01 | Wine grape | plasma membrane | 69.95 | 69.95 |
| KRH52408 | Soybean | plasma membrane | 68.18 | 68.53 |
| KRH61738 | Soybean | plasma membrane | 67.17 | 67.68 |
| Solyc08g021960.2.1 | Tomato | plasma membrane | 66.16 | 66.67 |
| KRH15833 | Soybean | plasma membrane | 66.16 | 66.67 |
| GSMUA_Achr3P19860_001 | Banana | plasma membrane | 67.17 | 66.67 |
| KRH05190 | Soybean | plasma membrane | 65.91 | 66.41 |
| GSMUA_Achr6P02900_001 | Banana | plasma membrane | 67.68 | 60.91 |
| Bra040066.1-P | Field mustard | plasma membrane | 67.42 | 60.54 |
| CDY23320 | Canola | plasma membrane | 67.42 | 60.41 |
| VIT_11s0118g00270.t01 | Wine grape | extracellular | 10.61 | 59.15 |
| PGSC0003DMT400062155 | Potato | plasma membrane | 52.27 | 52.94 |
| Os06t0681700-01 | Rice | plasma membrane | 25.0 | 22.0 |
Protein Annotations
| EMBL:AK100006 | EnsemblPlants:Os04t0645600-01 | EnsemblPlantsGene:Os04g0645600 | EntrezGene:4337195 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:EamA_dom | PANTHER:PTHR23051 | PANTHER:PTHR23051:SF7 | PFAM:PF00892 | ProteinID:BAF15980.1 |
| ProteinID:BAS91312.1 | ProteinID:CAE03174.2 | ProteinID:EEE61794.1 | RefSeq:XP_015633610.1 | SEG:seg | SignalP:SignalP-TM |
| SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI000021C646 | UniProt:Q7XQE4 | MapMan:24.2.1.7 | : |
Description
Protein of unknown function DUF6, transmembrane domain containing protein. (Os04t0645600-01)
Coordinates
chr4:-:32856597..32860277
Molecular Weight (calculated)
43350.4 Da
IEP (calculated)
5.900
GRAVY (calculated)
0.564
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNLKYRAG LVLIVAVVLI WVTSAEVTQG IFTKYKQPFA ITYLGASLMI IYIPLSFLKD FICNLLRRSS SSSRVSKVTN KSSFGGCAPL KNGEFQKMLE
101: MESQKTIVIN YTDVDIPVIE ETKPLICGIT EFDDVLKEQE LSTKEIAMYG LYLCPIWFVT EYLSNAALAR TSVASTTVLS STSGLFTLFI GVLLGQDSIN
201: AAKVIAVFIS MAGVVMTTMG QTWASDESEI SNSGATQRTL LGDMFGLLSA MSYGLFTVLL KKFAGEEGEK VDVQKLFGYL GLFSLVLLWW LVWPLTALGI
301: EPKFTIPHSA KVDEVVLANG LIGSVLSDYF WALSVVWTTP LVATLGMSLT IPLAMVADMI IHGRRYSAVY IFGSVQVFSG FVIANLADRF SRFLGL
101: MESQKTIVIN YTDVDIPVIE ETKPLICGIT EFDDVLKEQE LSTKEIAMYG LYLCPIWFVT EYLSNAALAR TSVASTTVLS STSGLFTLFI GVLLGQDSIN
201: AAKVIAVFIS MAGVVMTTMG QTWASDESEI SNSGATQRTL LGDMFGLLSA MSYGLFTVLL KKFAGEEGEK VDVQKLFGYL GLFSLVLLWW LVWPLTALGI
301: EPKFTIPHSA KVDEVVLANG LIGSVLSDYF WALSVVWTTP LVATLGMSLT IPLAMVADMI IHGRRYSAVY IFGSVQVFSG FVIANLADRF SRFLGL
001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
Arabidopsis Description
AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.