Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2D01G518100.1 | Wheat | plasma membrane | 99.24 | 99.0 |
TraesCS2B01G545100.1 | Wheat | plasma membrane | 99.24 | 99.0 |
HORVU2Hr1G114380.1 | Barley | plasma membrane | 98.24 | 97.5 |
Os04t0645600-01 | Rice | plasma membrane | 87.66 | 87.88 |
EES12961 | Sorghum | plasma membrane | 84.89 | 84.67 |
Zm00001d026442_P001 | Maize | plasma membrane | 62.72 | 83.84 |
Zm00001d002087_P001 | Maize | plasma membrane | 83.12 | 82.91 |
VIT_04s0008g06500.t01 | Wine grape | plasma membrane | 69.27 | 69.44 |
KRH52408 | Soybean | plasma membrane | 67.76 | 68.27 |
AT4G32140.1 | Thale cress | plasma membrane | 67.25 | 67.77 |
KRH61738 | Soybean | plasma membrane | 66.75 | 67.43 |
Solyc08g021960.2.1 | Tomato | plasma membrane | 66.25 | 66.92 |
KRH15833 | Soybean | plasma membrane | 65.24 | 65.9 |
KRH05190 | Soybean | plasma membrane | 64.74 | 65.39 |
GSMUA_Achr3P19860_001 | Banana | plasma membrane | 64.74 | 64.41 |
GSMUA_Achr6P02900_001 | Banana | plasma membrane | 66.5 | 60.0 |
Bra040066.1-P | Field mustard | plasma membrane | 65.24 | 58.73 |
CDY23320 | Canola | plasma membrane | 65.24 | 58.6 |
VIT_11s0118g00270.t01 | Wine grape | extracellular | 9.82 | 54.93 |
PGSC0003DMT400062155 | Potato | plasma membrane | 51.13 | 51.92 |
TraesCS7A01G452600.1 | Wheat | plasma membrane | 25.19 | 22.03 |
Protein Annotations
EnsemblPlants:TraesCS2A01G516300.1 | EnsemblPlantsGene:TraesCS2A01G516300 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:EamA_dom |
PANTHER:PTHR23051 | PANTHER:PTHR23051:SF7 | PFAM:PF00892 | SEG:seg | SignalP:SignalP-TM | SUPFAM:SSF103481 |
TMHMM:TMhelix | MapMan:24.2.1.7 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:740067587..740070724
Molecular Weight (calculated)
43008.1 Da
IEP (calculated)
7.921
GRAVY (calculated)
0.572
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPNLKYRAG LVLIVAVVLI WVTSAEVTQG IFANYKQPFA ITYLGASLMV IYIPLAFLKD FIYRLLRRNS GSSKASKIAS KSSFGGSAPL KNGEFQKMLE
101: MEPQKTVVIK ITDVDIPVLE ETKPLICGIG ECEGGVLKEQ QLSTKEIAIY GLYLCPIWFV TEYLSNAALA RTSVASTTVL SSTSGLFTLF IGVLLGQDSI
201: NAAKVIAVFV SMAGVAMTTM GQTWATDESE VSNSGATQRT LLGDMFGLMS AMSYGLFTVL LKKFAGEGSE KVDVQKLFGF LGLFSLCLLW WLVWPLTALG
301: IEPKFTMPHS AKVDEVVLAN GLIGSVLSDY FWALSVVWTN PLVATLGMSL TIPLAMVADM VIHGRHYSAV YIFGSVQVFS GFVIANLADR VSRFLGL
101: MEPQKTVVIK ITDVDIPVLE ETKPLICGIG ECEGGVLKEQ QLSTKEIAIY GLYLCPIWFV TEYLSNAALA RTSVASTTVL SSTSGLFTLF IGVLLGQDSI
201: NAAKVIAVFV SMAGVAMTTM GQTWATDESE VSNSGATQRT LLGDMFGLMS AMSYGLFTVL LKKFAGEGSE KVDVQKLFGF LGLFSLCLLW WLVWPLTALG
301: IEPKFTMPHS AKVDEVVLAN GLIGSVLSDY FWALSVVWTN PLVATLGMSL TIPLAMVADM VIHGRHYSAV YIFGSVQVFS GFVIANLADR VSRFLGL
001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
Arabidopsis Description
AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.