Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 7
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23320 | Canola | plasma membrane | 98.87 | 98.64 |
| AT4G32140.1 | Thale cress | plasma membrane | 78.0 | 87.31 |
| VIT_04s0008g06500.t01 | Wine grape | plasma membrane | 67.57 | 75.25 |
| KRH05190 | Soybean | plasma membrane | 65.99 | 74.05 |
| Zm00001d026442_P001 | Maize | plasma membrane | 48.98 | 72.73 |
| KRH52408 | Soybean | plasma membrane | 64.85 | 72.59 |
| KRH61738 | Soybean | plasma membrane | 64.63 | 72.52 |
| KRH15833 | Soybean | plasma membrane | 64.4 | 72.26 |
| Solyc08g021960.2.1 | Tomato | plasma membrane | 63.72 | 71.5 |
| GSMUA_Achr3P19860_001 | Banana | plasma membrane | 63.72 | 70.43 |
| Os04t0645600-01 | Rice | plasma membrane | 60.54 | 67.42 |
| EES12961 | Sorghum | plasma membrane | 58.96 | 65.33 |
| TraesCS2B01G545100.1 | Wheat | plasma membrane | 58.96 | 65.33 |
| TraesCS2A01G516300.1 | Wheat | plasma membrane | 58.73 | 65.24 |
| TraesCS2D01G518100.1 | Wheat | plasma membrane | 58.73 | 65.08 |
| HORVU2Hr1G114380.1 | Barley | plasma membrane | 58.28 | 64.25 |
| GSMUA_Achr6P02900_001 | Banana | plasma membrane | 63.95 | 64.09 |
| Zm00001d002087_P001 | Maize | plasma membrane | 57.6 | 63.82 |
| PGSC0003DMT400062155 | Potato | plasma membrane | 49.21 | 55.5 |
| Bra029620.1-P | Field mustard | cytosol, golgi, plastid | 8.84 | 25.0 |
| Bra040359.1-P | Field mustard | plasma membrane | 16.55 | 24.58 |
| Bra001234.1-P | Field mustard | plasma membrane | 22.68 | 23.36 |
Protein Annotations
| EnsemblPlants:Bra040066.1 | EnsemblPlants:Bra040066.1-P | EnsemblPlantsGene:Bra040066 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:EamA_dom | PANTHER:PTHR23051 | PANTHER:PTHR23051:SF7 | PFAM:PF00892 | SEG:seg | SUPFAM:SSF103481 |
| TMHMM:TMhelix | UniParc:UPI0002546B36 | UniProt:M4FG41 | MapMan:24.2.1.7 | : | : |
Description
AT4G32140 (E=3e-172) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: membrane protein (TAIR:AT3G07080.1); Has 1078 Blast hits to 1078 proteins in 273 species: Archae - 20; Bacteria - 294; Metazoa - 244; Fungi - 147; Plants - 41; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).
Coordinates
chrA08:+:13205272..13208284
Molecular Weight (calculated)
48516.1 Da
IEP (calculated)
6.521
GRAVY (calculated)
0.360
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWRYKAGLF LIGTVVVIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRRSS RANDVSSVEV GSPLRHKVIE MGLQGTITKK
101: DSEEDFSSHE EDVRPLIGRG KEETQRHGKE VITTKQIVLY GLYLAPIWFV TEYLSNAALA RTSVASTTVL SSTSGLFTLF IGALLGQDTL NLSKVVAVFV
201: SMAGVVMTTL GKTWAADDSQ LNSSLNGQRS LVGDLFGLLS AVSYGLFTVL LKKFAGEEGE GVDVQKLFGY IGLFTLVALW WLVWPLTALG IEPKFTIPHS
301: AKLDEVVLAN GFVGSVLSDY FWALSVVWTT PLVATLGMSL TIPLAMVADM MIHGRHYSAI YILGSTQVFA GFVIANISDL FSKKLGEYPN AIRECNLALE
401: ATETFSVLAL NKLDYSFRDA RIVLNMEPEN VSWIGGCRCV K
101: DSEEDFSSHE EDVRPLIGRG KEETQRHGKE VITTKQIVLY GLYLAPIWFV TEYLSNAALA RTSVASTTVL SSTSGLFTLF IGALLGQDTL NLSKVVAVFV
201: SMAGVVMTTL GKTWAADDSQ LNSSLNGQRS LVGDLFGLLS AVSYGLFTVL LKKFAGEEGE GVDVQKLFGY IGLFTLVALW WLVWPLTALG IEPKFTIPHS
301: AKLDEVVLAN GFVGSVLSDY FWALSVVWTT PLVATLGMSL TIPLAMVADM MIHGRHYSAI YILGSTQVFA GFVIANISDL FSKKLGEYPN AIRECNLALE
401: ATETFSVLAL NKLDYSFRDA RIVLNMEPEN VSWIGGCRCV K
001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
Arabidopsis Description
AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.