Factsheet for Bra001234.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 7
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74064	Canola	plasma membrane	98.83	98.83
CDY08016	Canola	plasma membrane	95.09	95.54
AT3G07080.1	Thale cress	plasma membrane	85.51	83.56
Bra040359.1-P	Field mustard	plasma membrane	57.48	82.83
Bra029620.1-P	Field mustard	cytosol, golgi, plastid	29.91	82.05
Zm00001d014470_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	42.52	68.16
VIT_07s0005g06440.t01	Wine grape	plasma membrane	66.82	65.75
PGSC0003DMT400045503	Potato	plasma membrane	61.68	62.56
KRH46755	Soybean	endoplasmic reticulum, plasma membrane, vacuole	63.55	62.1
Solyc09g061320.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	61.92	60.78
GSMUA_Achr1P26240_001	Banana	plasma membrane	57.48	58.57
GSMUA_Achr11P...	Banana	plasma membrane	58.41	57.6
KXG20650	Sorghum	plasma membrane	61.22	57.33
Os06t0681700-01	Rice	plasma membrane	59.58	56.67
Zm00001d036564_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	59.11	56.1
Zm00001d014468_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	60.28	56.09
TraesCS7D01G441800.2	Wheat	plasma membrane	57.48	54.19
TraesCS7B01G352500.1	Wheat	plasma membrane	57.24	53.96
Zm00001d014469_P001	Maize	extracellular	19.16	53.95
TraesCS7A01G452600.1	Wheat	plasma membrane	57.01	53.74
HORVU7Hr1G102150.1	Barley	cytosol, nucleus	57.48	38.5
Bra040066.1-P	Field mustard	plasma membrane	23.36	22.68

Protein Annotations

EnsemblPlants:Bra001234.1	EnsemblPlants:Bra001234.1-P	EnsemblPlantsGene:Bra001234	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:SLC35_F1/F2/F6	PANTHER:PTHR23051	PANTHER:PTHR23051:SF1	PFAM:PF06027	SEG:seg	SUPFAM:SSF103481
TMHMM:TMhelix	UniParc:UPI000254045D	UniProt:M4CAK5	MapMan:24.2.1.7	:	:

Description

AT3G07080 (E=4e-104) | membrane protein

Coordinates

chrA03:+:15448190..15449639

Molecular Weight (calculated)

46409.5 Da

IEP (calculated)

4.650

GRAVY (calculated)

0.517

Length

428 amino acids

Sequence
(BLAST)

001: MSSKVWRWVL GLIYILAVAM IWIAASFVVQ SVVDAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSI LFWRSKRSHL LELVESEKDV LLGGGGVVVS
101: SDVSEGSGVV VREEEGDGSG IESGVESVEL DGSGEICAKG LDEKGRWTRM RVAKVSLVIC PFWFLAQLTF NLSLKYTTVT SNTILSSSSS LFTFLVSLIF
201: LGEKFTWVKL FSVLLCMSGT IIVSLGDSES NSTATAKNPL LGDVLSLLSA AFYAVYITLI RKKLPDDDEK NGRFSMAQLL GFLGLFNFFI FLPVALILNF
301: TKRERFNSLT LKQLGLVVGK GLLDNVLSDY LWAKAVLLTT TTVATAGLTI QVPLAAIVDT LAGNKPSFTD YIGAAAVMVG FAGINIPAEM FCRSKETSIE
401: LEPGTSFTDP PQVVSDSIRV DSSETLAS

Best Arabidopsis Sequence Match ( AT3G07080.1 )
(BLAST)

001: MSTKLWRWVL GLIYLFAVAT IWIAASFVVQ SVVEAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSL LFWRSKRSHL MELVESEKAV LLGKDVSGVK
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV

Arabidopsis Description

At3g07080 [Source:UniProtKB/TrEMBL;Acc:Q9SFT8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.