CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH11076
KRH21197
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH65384
KRH76090
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32140.1	KRG97393	AT1G27300.1	21798944
AT4G32140.1	KRH31520	AT1G27300.1	21798944
AT4G32140.1	KRH76090	AT1G27300.1	21798944
AT4G32140.1	KRH65384	AT3G60600.1	21798944
AT4G32140.1	KRH76164	AT3G60600.1	21798944
AT4G32140.1	KRH11076	AT4G19030.1	21798944
AT4G32140.1	KRH21197	AT4G19030.1	21798944
AT4G32140.1	KRH42923	AT4G19030.1	21798944
AT4G32140.1	KRH42926	AT4G19030.1	21798944
AT4G32140.1	KRH45251	AT4G19030.1	21798944
AT4G32140.1	KRH59035	AT4G19030.1	21798944
AT4G32140.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61738	Soybean	plasma membrane	98.22	98.47
KRH05190	Soybean	plasma membrane	81.98	82.19
KRH15833	Soybean	plasma membrane	81.47	81.68
VIT_04s0008g06500.t01	Wine grape	plasma membrane	80.96	80.56
AT4G32140.1	Thale cress	plasma membrane	75.63	75.63
Zm00001d026442_P001	Maize	plasma membrane	55.08	73.06
Solyc08g021960.2.1	Tomato	plasma membrane	72.33	72.52
GSMUA_Achr3P19860_001	Banana	plasma membrane	71.83	70.93
Os04t0645600-01	Rice	plasma membrane	68.53	68.18
TraesCS2B01G545100.1	Wheat	plasma membrane	68.53	67.84
TraesCS2D01G518100.1	Wheat	plasma membrane	68.53	67.84
TraesCS2A01G516300.1	Wheat	plasma membrane	68.27	67.76
HORVU2Hr1G114380.1	Barley	plasma membrane	68.27	67.25
EES12961	Sorghum	plasma membrane	66.24	65.58
GSMUA_Achr6P02900_001	Banana	plasma membrane	73.1	65.45
Bra040066.1-P	Field mustard	plasma membrane	72.59	64.85
Zm00001d002087_P001	Maize	plasma membrane	65.48	64.82
CDY23320	Canola	plasma membrane	72.33	64.48
KRH05344	Soybean	plasma membrane	54.57	54.99
KRH15685	Soybean	golgi, nucleus, plasma membrane	43.91	44.7
KRH46755	Soybean	endoplasmic reticulum, plasma membrane, vacuole	25.38	22.83

Protein Annotations

EMBL:ACUP02003419	EnsemblPlants:KRH52408	EnsemblPlantsGene:GLYMA_06G066500	EntrezGene:100792013	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:EamA_dom	PANTHER:PTHR23051	PANTHER:PTHR23051:SF7	PFAM:PF00892	ProteinID:KRH52408
ProteinID:KRH52408.1	SEG:seg	SignalP:SignalP-TM	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0002339CF5
UniProt:A0A0R0JI52	MapMan:24.2.1.7	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:5069379..5074710

Molecular Weight (calculated)

43068.6 Da

IEP (calculated)

6.523

GRAVY (calculated)

0.503

Length

394 amino acids

Sequence
(BLAST)

001: MGWRYNAGLF LIVTVVIIWV TSAEVTQDIF TDYKQPFAVT YLGASLMVVY LPIAFIKDWF CNLLKSRSSK SGKNAECVDE FSVRISSPLK SNGVQKNFEL
101: ELGSVNRKDS DLDLSTLAEV KPLVAKYNDN TNVLKVERQL NGKEIAAYGF YIAPIWFITE YLSNAALART SVASTTVLSS TSGLFTLFIG AFMGQDSLNV
201: AKVVAVLVSM AGVVMTTLGK TWAADESQLS DASGKHSLVG DLFGILSAMS YGLFTVLLKK FSGEEGERVD VQKLFGYIGL FTLVALWWLV WPLMALGIEP
301: KFTIPHSAKV DEVVLANGFI GSVLSDYFWA LCVVWTTPLV ATLGMSLTIP LAMVADMVIH GRHYSAVYIL GSVQVFAGFV IANLSDRLTK MLGL

Best Arabidopsis Sequence Match ( AT4G32140.1 )
(BLAST)

001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL

Arabidopsis Description

AT4g32140/F10N7_50 [Source:UniProtKB/TrEMBL;Acc:O49378]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.