Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- golgi 4
- plasma membrane 6
- endoplasmic reticulum 5
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34916 | Canola | plasma membrane | 83.16 | 93.22 |
| CDY05314 | Canola | plasma membrane | 82.37 | 77.48 |
| CDX82733 | Canola | plasma membrane | 42.63 | 75.35 |
| CDY08016 | Canola | plasma membrane | 82.89 | 73.94 |
| CDX74064 | Canola | plasma membrane | 82.89 | 73.6 |
| AT3G07080.1 | Thale cress | plasma membrane | 83.95 | 72.83 |
| CDY65595 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 22.11 | 70.59 |
| Zm00001d014470_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 47.37 | 67.42 |
| VIT_07s0005g06440.t01 | Wine grape | plasma membrane | 71.58 | 62.53 |
| CDY24649 | Canola | cytosol | 19.21 | 62.39 |
| KRH46755 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 70.53 | 61.19 |
| PGSC0003DMT400045503 | Potato | plasma membrane | 67.89 | 61.14 |
| Solyc09g061320.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane | 67.37 | 58.72 |
| GSMUA_Achr1P26240_001 | Banana | plasma membrane | 62.89 | 56.9 |
| GSMUA_Achr11P... | Banana | plasma membrane | 64.47 | 56.45 |
| Os06t0681700-01 | Rice | plasma membrane | 65.26 | 55.11 |
| KXG20650 | Sorghum | plasma membrane | 66.05 | 54.92 |
| Zm00001d036564_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 64.74 | 54.55 |
| Zm00001d014468_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 65.79 | 54.35 |
| TraesCS7D01G441800.2 | Wheat | plasma membrane | 63.16 | 52.86 |
| TraesCS7A01G452600.1 | Wheat | plasma membrane | 62.89 | 52.64 |
| TraesCS7B01G352500.1 | Wheat | plasma membrane | 62.89 | 52.64 |
| Zm00001d014469_P001 | Maize | extracellular | 20.0 | 50.0 |
| HORVU7Hr1G102150.1 | Barley | cytosol, nucleus | 63.95 | 38.03 |
| CDY23320 | Canola | plasma membrane | 25.79 | 22.17 |
Protein Annotations
| MapMan:24.2.1.7 | GO:A0A078JLT2 | UniProt:A0A078JLT2 | EnsemblPlants:CDY66751 | ProteinID:CDY66751 | ProteinID:CDY66751.1 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00055673001 | PFAM:PF06027 | PANTHER:PTHR23051 |
| PANTHER:PTHR23051:SF1 | InterPro:SLC35_F1/F2/F6 | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI0004EE39C8 | SEG:seg |
Description
BnaCnng52190DBnaCnng52190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLT2]
Coordinates
chrLK035441:-:4173..5801
Molecular Weight (calculated)
41530.7 Da
IEP (calculated)
4.705
GRAVY (calculated)
0.584
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKVWRWVL GLTYILAVAT IWIASSFVVQ SVVDAGVSPF LITFICNSLF VVYLPIFEIS RYLEDTYGSS ILFWRSKRSH LLELAESEKE ALLGQDVVIS
101: DASEVSGVVV REDGNGLDEK GRWTRMRVAK VSLLICPFWF LAQLTFNLSL KYTTVTSNTI LSSASSLFTF LVSLLFLGEK FTWLKLLSVL LCMSGTIIVS
201: IGDSESDSTA SAKNPLLGDI LSLVSAALYA VYITLIRKKL PDDDERNVSF SMAQLLGFLG LFNFFIFLPA ALILNFTKRE RFNALTLEQF GLVVGKGLLD
301: NVLSDYLWAK AVLLTTTTVA TAGLTIQVPL AAIVDGLSGN KPSFTDYIGA AAVMVGFAGI NIPSESKETA IELEPETLVS
101: DASEVSGVVV REDGNGLDEK GRWTRMRVAK VSLLICPFWF LAQLTFNLSL KYTTVTSNTI LSSASSLFTF LVSLLFLGEK FTWLKLLSVL LCMSGTIIVS
201: IGDSESDSTA SAKNPLLGDI LSLVSAALYA VYITLIRKKL PDDDERNVSF SMAQLLGFLG LFNFFIFLPA ALILNFTKRE RFNALTLEQF GLVVGKGLLD
301: NVLSDYLWAK AVLLTTTTVA TAGLTIQVPL AAIVDGLSGN KPSFTDYIGA AAVMVGFAGI NIPSESKETA IELEPETLVS
001: MSTKLWRWVL GLIYLFAVAT IWIAASFVVQ SVVEAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSL LFWRSKRSHL MELVESEKAV LLGKDVSGVK
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
Arabidopsis Description
At3g07080 [Source:UniProtKB/TrEMBL;Acc:Q9SFT8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.