Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 7
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g005760.2.1 | Tomato | nucleus | 95.65 | 96.8 |
| VIT_01s0026g00330.t01 | Wine grape | plasma membrane | 65.81 | 67.82 |
| KRG99307 | Soybean | golgi | 63.83 | 64.34 |
| CDY11605 | Canola | endoplasmic reticulum, plasma membrane | 58.3 | 60.7 |
| KRH74622 | Soybean | plasma membrane | 60.28 | 60.16 |
| Bra003957.1-P | Field mustard | plasma membrane | 57.91 | 60.04 |
| CDX68347 | Canola | endoplasmic reticulum, plasma membrane | 57.31 | 59.43 |
| CDY23504 | Canola | plasma membrane | 57.91 | 59.31 |
| KRH69528 | Soybean | vacuole | 59.29 | 58.94 |
| KRH45706 | Soybean | plasma membrane | 48.62 | 58.43 |
| Bra016227.1-P | Field mustard | plasma membrane, vacuole | 58.7 | 58.01 |
| AT1G70280.2 | Thale cress | plasma membrane | 58.1 | 57.76 |
| CDY38803 | Canola | plasma membrane, vacuole | 58.1 | 57.76 |
| CDY59085 | Canola | plasma membrane | 51.58 | 54.95 |
| Os02t0730400-01 | Rice | golgi, plasma membrane, vacuole | 54.55 | 54.33 |
| CDY47647 | Canola | plasma membrane | 51.58 | 54.15 |
| TraesCS6B01G322100.1 | Wheat | plasma membrane | 53.36 | 53.78 |
| GSMUA_Achr3P12850_001 | Banana | endoplasmic reticulum | 51.19 | 53.62 |
| TraesCS6A01G291600.1 | Wheat | plasma membrane | 53.16 | 53.59 |
| Bra024625.1-P | Field mustard | plasma membrane | 52.77 | 53.51 |
| PGSC0003DMT400001332 | Potato | golgi | 52.96 | 53.28 |
| TraesCS6D01G272900.2 | Wheat | plasma membrane | 52.77 | 53.19 |
| HORVU6Hr1G072950.14 | Barley | golgi | 53.16 | 52.23 |
| AT1G23880.1 | Thale cress | plasma membrane | 54.74 | 50.83 |
| EES07314 | Sorghum | golgi, plasma membrane, vacuole | 51.58 | 50.39 |
| Zm00001d051759_P001 | Maize | golgi, plasma membrane, plastid | 51.19 | 50.19 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 49.8 | 50.1 |
| Zm00001d017926_P003 | Maize | golgi | 50.0 | 49.61 |
| Os06t0269300-01 | Rice | mitochondrion | 50.0 | 48.94 |
| EER89586 | Sorghum | golgi, plasma membrane | 46.25 | 46.15 |
| Zm00001d037307_P001 | Maize | plasma membrane, plastid, vacuole | 45.45 | 45.28 |
| Zm00001d045703_P002 | Maize | plasma membrane | 45.06 | 45.06 |
| TraesCS7B01G116500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 49.6 | 44.58 |
| TraesCS7D01G211500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 49.01 | 44.36 |
| TraesCS7A01G209600.1 | Wheat | endoplasmic reticulum, plasma membrane | 49.41 | 43.86 |
| HORVU7Hr1G042740.2 | Barley | plastid | 50.2 | 37.91 |
| PGSC0003DMT400018285 | Potato | endoplasmic reticulum | 27.27 | 28.81 |
| PGSC0003DMT400010568 | Potato | extracellular | 17.98 | 22.69 |
Protein Annotations
| EntrezGene:102586185 | Gene3D:2.120.10.30 | MapMan:35.2 | InterPro:6-blade_b-propeller_TolB-like | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR011042 | UniProt:M0ZY72 |
| InterPro:NHL_repeat | PFAM:PF01436 | EnsemblPlantsGene:PGSC0003DMG400004115 | PGSC:PGSC0003DMG400004115 | EnsemblPlants:PGSC0003DMT400010531 | PANTHER:PTHR13833 |
| PANTHER:PTHR13833:SF42 | SUPFAM:SSF101898 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0002953328 | RefSeq:XP_015168082.1 |
| SEG:seg | : | : | : | : | : |
Description
NHL repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004115]
Coordinates
chr5:-:7673124..7676670
Molecular Weight (calculated)
56486.9 Da
IEP (calculated)
7.250
GRAVY (calculated)
-0.438
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVKFSTLIL IFVFLSAAFC SVSATPSPAK IVNGFVTNAV TKLMKWVWSL KASTKTVISG RPMMKFESGY SVETVFDGSK LGIEPYSVEI MSSGELLILD
101: SANSNLYKIS SSLSQYTRPR LVAGSADGYS GHVDGKLREA RMNHPKGLTV DDRGNIYVAD TDNMVIRKIS DAGTMTTIAG GKWSRGGGHV DGPSEDAKFS
201: NDFDVVFMGS SCSLLVIDRG NKAIREIQLH FEDCAYQYDS GFPLGIAVLL AAGFFGYMLA LLQRRVGTMV SPEEVSMKDQ NAYIFTDHYE KPVKSSVRPP
301: LIPTEGEVEK QEEGMLGSLG NLITRTGASV SEILGGVFPM FKRLPLNHHY QQQQQYQQQQ YQQQQYQQHT WPVQDSVVVP KEDEPPSIES RTPTPRKTYA
401: FMSKDSEKMQ QLKQSRAFYG GGWNSDFQQH QQQTQKHLQH HQYHSSGPQT FYEQSSDNTK EVVFGAIQEQ GQLEAMIIKP LDHANCIYDR HNARSRFNSA
501: GYSQGY
101: SANSNLYKIS SSLSQYTRPR LVAGSADGYS GHVDGKLREA RMNHPKGLTV DDRGNIYVAD TDNMVIRKIS DAGTMTTIAG GKWSRGGGHV DGPSEDAKFS
201: NDFDVVFMGS SCSLLVIDRG NKAIREIQLH FEDCAYQYDS GFPLGIAVLL AAGFFGYMLA LLQRRVGTMV SPEEVSMKDQ NAYIFTDHYE KPVKSSVRPP
301: LIPTEGEVEK QEEGMLGSLG NLITRTGASV SEILGGVFPM FKRLPLNHHY QQQQQYQQQQ YQQQQYQQHT WPVQDSVVVP KEDEPPSIES RTPTPRKTYA
401: FMSKDSEKMQ QLKQSRAFYG GGWNSDFQQH QQQTQKHLQH HQYHSSGPQT FYEQSSDNTK EVVFGAIQEQ GQLEAMIIKP LDHANCIYDR HNARSRFNSA
501: GYSQGY
001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.