Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 5
- plastid 1
- vacuole 4
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47647 | Canola | plasma membrane | 71.38 | 80.71 |
| CDY59085 | Canola | plasma membrane | 69.17 | 79.37 |
| Bra024625.1-P | Field mustard | plasma membrane | 71.56 | 78.16 |
| AT1G70280.2 | Thale cress | plasma membrane | 66.06 | 70.73 |
| VIT_01s0026g00330.t01 | Wine grape | plasma membrane | 55.23 | 61.3 |
| KRG99307 | Soybean | golgi | 54.13 | 58.76 |
| Solyc05g005760.2.1 | Tomato | nucleus | 50.83 | 55.4 |
| PGSC0003DMT400010531 | Potato | golgi | 50.83 | 54.74 |
| KRH74622 | Soybean | plasma membrane | 50.28 | 54.04 |
| KRH69528 | Soybean | vacuole | 48.44 | 51.87 |
| KRH45706 | Soybean | plasma membrane | 39.82 | 51.54 |
| Os02t0730400-01 | Rice | golgi, plasma membrane, vacuole | 46.42 | 49.8 |
| TraesCS6B01G322100.1 | Wheat | plasma membrane | 45.14 | 49.0 |
| TraesCS6A01G291600.1 | Wheat | plasma membrane | 45.14 | 49.0 |
| TraesCS6D01G272900.2 | Wheat | plasma membrane | 44.95 | 48.8 |
| HORVU6Hr1G072950.14 | Barley | golgi | 45.32 | 47.96 |
| Zm00001d017926_P003 | Maize | golgi | 44.59 | 47.65 |
| EES07314 | Sorghum | golgi, plasma membrane, vacuole | 44.95 | 47.3 |
| Os06t0269300-01 | Rice | mitochondrion | 44.59 | 47.0 |
| GSMUA_Achr3P12850_001 | Banana | endoplasmic reticulum | 41.65 | 47.0 |
| Zm00001d051759_P001 | Maize | golgi, plasma membrane, plastid | 44.04 | 46.51 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 42.57 | 46.12 |
| EER89586 | Sorghum | golgi, plasma membrane | 40.37 | 43.39 |
| Zm00001d037307_P001 | Maize | plasma membrane, plastid, vacuole | 40.37 | 43.31 |
| Zm00001d045703_P002 | Maize | plasma membrane | 39.63 | 42.69 |
| AT5G14890.1 | Thale cress | plasma membrane | 37.06 | 41.91 |
| TraesCS7B01G116500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 41.47 | 40.14 |
| TraesCS7D01G211500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 41.1 | 40.07 |
| TraesCS7A01G209600.1 | Wheat | endoplasmic reticulum, plasma membrane | 41.47 | 39.65 |
| HORVU7Hr1G042740.2 | Barley | plastid | 42.02 | 34.18 |
| AT3G14860.2 | Thale cress | plastid, vacuole | 26.79 | 29.61 |
| AT1G23890.2 | Thale cress | extracellular | 17.61 | 24.0 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:35.2 | InterPro:6-blade_b-propeller_TolB-like | EntrezGene:838999 | ProteinID:AEE30445.1 | ProteinID:ANM59408.1 |
| ArrayExpress:AT1G23880 | EnsemblPlantsGene:AT1G23880 | RefSeq:AT1G23880 | TAIR:AT1G23880 | RefSeq:AT1G23880-TAIR-G | EnsemblPlants:AT1G23880.1 |
| TAIR:AT1G23880.1 | EMBL:AY075650 | EMBL:AY101522 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0009506 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR011042 | InterPro:NHL_repeat |
| RefSeq:NP_001321768.1 | RefSeq:NP_173800.2 | PFAM:PF01436 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF42 | UniProt:Q8S9K1 | SUPFAM:SSF101898 | TMHMM:TMhelix |
| UniParc:UPI000009DEF7 | SEG:seg | : | : | : | : |
Description
At1g23880/T23E23_8 [Source:UniProtKB/TrEMBL;Acc:Q8S9K1]
Coordinates
chr1:+:8435657..8438811
Molecular Weight (calculated)
61226.7 Da
IEP (calculated)
7.081
GRAVY (calculated)
-0.192
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNVSLFYAS LSILFCCFLF FFNLSPSFFF LRLSRSVTTS FNILNIHLSH FAIRLSSTLV MSRHFLFLGI IILLFSAFVA SAPSSTSPAK IVNSFISNHG
101: TSLLKWLWSL SFKTTTKTAV PTKSMVKFEN GYSVETVLDG SKLGIEPYSI QVLSNGELLI LDSQNSNIYQ ISSSLSLYSR PRLVTGSPEG YPGHVDGRLR
201: DARLNNPKGL TVDDRGNIYV ADTVNNAIRK ISEAGVTTIA GGKMVRGGGH VDGPSEDAKF SNDFDVVYLG SSCSLLVIDR GNQAIREIQL HFDDCADQYG
301: SGFPLGIAVL VAAVFFGYML ALLQRRLSSI VSYHTDQEVF EAVPDQDPIK PVRPPLILTG DEQEKQEESF LGTLQIFISN AWVFSVELFS GMFPGLRKKQ
401: TVGLNFNHQE TKHSAFSTTS WPIQESFVIH NKDEPPPVES RNATPGKIYP FMSKDATEKM QQLRQSRALY RSLDAEFLQE QQQEKHQQYH HRHHSTIPYT
501: LYEQSSEKTN EIVFGPGQEQ DQMNTHQNIH HRAHQFVSYP YGYYS
101: TSLLKWLWSL SFKTTTKTAV PTKSMVKFEN GYSVETVLDG SKLGIEPYSI QVLSNGELLI LDSQNSNIYQ ISSSLSLYSR PRLVTGSPEG YPGHVDGRLR
201: DARLNNPKGL TVDDRGNIYV ADTVNNAIRK ISEAGVTTIA GGKMVRGGGH VDGPSEDAKF SNDFDVVYLG SSCSLLVIDR GNQAIREIQL HFDDCADQYG
301: SGFPLGIAVL VAAVFFGYML ALLQRRLSSI VSYHTDQEVF EAVPDQDPIK PVRPPLILTG DEQEKQEESF LGTLQIFISN AWVFSVELFS GMFPGLRKKQ
401: TVGLNFNHQE TKHSAFSTTS WPIQESFVIH NKDEPPPVES RNATPGKIYP FMSKDATEKM QQLRQSRALY RSLDAEFLQE QQQEKHQQYH HRHHSTIPYT
501: LYEQSSEKTN EIVFGPGQEQ DQMNTHQNIH HRAHQFVSYP YGYYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.