Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69553 | Canola | plasma membrane | 84.02 | 87.47 |
| Bra008732.1-P | Field mustard | plasma membrane | 74.48 | 77.54 |
| CDY09894 | Canola | golgi, plasma membrane | 71.37 | 74.3 |
| VIT_14s0066g01590.t01 | Wine grape | golgi | 53.11 | 51.0 |
| PGSC0003DMT400001332 | Potato | golgi | 48.96 | 46.92 |
| Solyc02g087010.2.1 | Tomato | golgi | 48.34 | 45.96 |
| KRG93349 | Soybean | golgi, plasma membrane, vacuole | 49.79 | 44.78 |
| TraesCS6A01G291600.1 | Wheat | plasma membrane | 44.61 | 42.83 |
| Os02t0730400-01 | Rice | golgi, plasma membrane, vacuole | 45.02 | 42.72 |
| TraesCS6B01G322100.1 | Wheat | plasma membrane | 44.4 | 42.63 |
| TraesCS6D01G272900.2 | Wheat | plasma membrane | 44.4 | 42.63 |
| AT1G70280.2 | Thale cress | plasma membrane | 44.61 | 42.24 |
| HORVU6Hr1G072950.14 | Barley | golgi | 44.61 | 41.75 |
| Os06t0269300-01 | Rice | mitochondrion | 44.19 | 41.2 |
| EER89586 | Sorghum | golgi, plasma membrane | 43.15 | 41.03 |
| GSMUA_Achr3P12850_001 | Banana | endoplasmic reticulum | 40.87 | 40.79 |
| EES07314 | Sorghum | golgi, plasma membrane, vacuole | 43.78 | 40.73 |
| Zm00001d045703_P002 | Maize | plasma membrane | 42.74 | 40.71 |
| Zm00001d017926_P003 | Maize | golgi | 42.53 | 40.2 |
| Zm00001d051759_P001 | Maize | golgi, plasma membrane, plastid | 42.53 | 39.73 |
| Zm00001d037307_P001 | Maize | plasma membrane, plastid, vacuole | 41.7 | 39.57 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 40.04 | 38.37 |
| AT1G23880.1 | Thale cress | plasma membrane | 41.91 | 37.06 |
| TraesCS7B01G116500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 42.53 | 36.41 |
| TraesCS7D01G211500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 42.12 | 36.31 |
| TraesCS7A01G209600.1 | Wheat | endoplasmic reticulum, plasma membrane | 42.53 | 35.96 |
| HORVU7Hr1G042740.2 | Barley | plastid | 42.74 | 30.75 |
| AT3G14860.2 | Thale cress | plastid, vacuole | 26.97 | 26.37 |
| AT1G23890.2 | Thale cress | extracellular | 20.33 | 24.5 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:35.2 | InterPro:6-blade_b-propeller_TolB-like | EntrezGene:831341 | UniProt:A0A178UIP3 | ProteinID:AED92086.2 |
| ArrayExpress:AT5G14890 | EnsemblPlantsGene:AT5G14890 | RefSeq:AT5G14890 | TAIR:AT5G14890 | RefSeq:AT5G14890-TAIR-G | EnsemblPlants:AT5G14890.1 |
| TAIR:AT5G14890.1 | UniProt:F4K891 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR011042 | InterPro:NHL_repeat | RefSeq:NP_196993.3 | ProteinID:OAO93579.1 |
| PFAM:PF01436 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR13833 | PANTHER:PTHR13833:SF57 | SUPFAM:SSF75011 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0007DF27A3 |
| SEG:seg | : | : | : | : | : |
Description
NHL domain-containing protein [Source:TAIR;Acc:AT5G14890]
Coordinates
chr5:+:4817997..4820601
Molecular Weight (calculated)
54050.0 Da
IEP (calculated)
7.377
GRAVY (calculated)
-0.526
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKNANLLIL FMIFMFFFCG LSSVSAKPPP VKIVSGLVTN VASILWKWLW SLQTSTTTTT TTKSGVSSRS MVKYESGYNM ETVFDGSKLG IEPYAIEVSP
101: NGGELIVLDS ENSNIHKISM PLSRYGKPKL LSGSQEGYTG HVDGKLKEAR MNRPRGLAMD DRGNIYVADT INMAIRKISD DGVSTIAAGG RWSGGSKEES
201: MRFSDDFDLI YVSSSCSLLV IDRGNQLIKE IQLHDHDCSQ PEPDTDSLHL GTALLVAAVF FGYMLALLVR RVRSLFSSSS HDTKSKRHVA TPSMTMAPYQ
301: RYPRPVRQPL IPPQHESEKE EGFLGSLGKL VVKTGSSVSE MMSGSRNVIP PNFHQYHHQQ EPNQWPVQES FAIPEEDGPP ALEPRSGTNP DKPYLRAQGT
401: NQNRSYYQDY DQYQNQQKRN VNDTASFEDN REKNEIVFGA VQEQDGRREA MVIKAVDFNE AINDQRNLRP RINYMGYSSQ VY
101: NGGELIVLDS ENSNIHKISM PLSRYGKPKL LSGSQEGYTG HVDGKLKEAR MNRPRGLAMD DRGNIYVADT INMAIRKISD DGVSTIAAGG RWSGGSKEES
201: MRFSDDFDLI YVSSSCSLLV IDRGNQLIKE IQLHDHDCSQ PEPDTDSLHL GTALLVAAVF FGYMLALLVR RVRSLFSSSS HDTKSKRHVA TPSMTMAPYQ
301: RYPRPVRQPL IPPQHESEKE EGFLGSLGKL VVKTGSSVSE MMSGSRNVIP PNFHQYHHQQ EPNQWPVQES FAIPEEDGPP ALEPRSGTNP DKPYLRAQGT
401: NQNRSYYQDY DQYQNQQKRN VNDTASFEDN REKNEIVFGA VQEQDGRREA MVIKAVDFNE AINDQRNLRP RINYMGYSSQ VY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.