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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • endoplasmic reticulum 6
  • golgi 5
  • extracellular 7
  • vacuole 4
  • plasma membrane 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:endoplasmic reticulum, extracellular, golgi
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY47648 Canola extracellular 48.75 74.71
Bra024626.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 59.0 63.27
CDY59087 Canola endoplasmic reticulum, extracellular, plasma membrane 58.25 62.47
CDY25806 Canola extracellular, plasma membrane, vacuole 22.5 50.85
Solyc05g005770.2.1 Tomato nucleus 39.0 39.2
Os08t0414600-01 Rice extracellular 26.75 38.91
VIT_01s0026g00320.t01 Wine grape endoplasmic reticulum, extracellular, plasma membrane 41.25 37.67
PGSC0003DMT400010568 Potato extracellular 37.25 37.16
KRH45709 Soybean endoplasmic reticulum 36.5 36.5
EES13823 Sorghum endoplasmic reticulum, golgi, plasma membrane 33.5 32.21
TraesCS2B01G153900.1 Wheat extracellular, plasma membrane, vacuole 31.5 31.34
Zm00001d032308_P001 Maize endoplasmic reticulum, extracellular, golgi 32.25 30.86
TraesCS2D01G133600.2 Wheat extracellular, golgi, plasma membrane 32.25 30.28
TraesCS2A01G131500.2 Wheat extracellular, golgi, plasma membrane 31.5 29.93
AT3G14860.2 Thale cress plastid, vacuole 25.5 20.69
AT1G70280.2 Thale cress plasma membrane 26.0 20.43
AT5G14890.1 Thale cress plasma membrane 24.5 20.33
AT1G23880.1 Thale cress plasma membrane 24.0 17.61
Protein Annotations
Gene3D:2.120.10.30MapMan:35.2InterPro:6-blade_b-propeller_TolB-likeEntrezGene:839000ProteinID:AEE30446.1ArrayExpress:AT1G23890
EnsemblPlantsGene:AT1G23890RefSeq:AT1G23890TAIR:AT1G23890RefSeq:AT1G23890-TAIR-GEnsemblPlants:AT1G23890.2TAIR:AT1G23890.2
Unigene:At.15673UniProt:F4I7N5GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0016020GO:GO:0016021InterPro:IPR011042InterPro:IPR013017InterPro:NHL_repeatInterPro:NHL_repeat_subgr
RefSeq:NP_973902.1PFAM:PF01436PO:PO:0000005PO:PO:0000013PO:PO:0000037PO:PO:0000084
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS51125PANTHER:PTHR13833
PANTHER:PTHR13833:SF71SUPFAM:SSF101898SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000034F3D6SEG:seg
Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
Coordinates
chr1:-:8438900..8440866
Molecular Weight (calculated)
43589.8 Da
IEP (calculated)
5.223
GRAVY (calculated)
0.039
Length
400 amino acids
Sequence
(BLAST)
001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.