Factsheet for TraesCS2B01G153900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G133600.2	Wheat	extracellular, golgi, plasma membrane	87.31	82.39
TraesCS2A01G131500.2	Wheat	extracellular, golgi, plasma membrane	82.34	78.62
Os08t0414600-01	Rice	extracellular	37.31	54.55
EES13823	Sorghum	endoplasmic reticulum, golgi, plasma membrane	51.24	49.52
Zm00001d032308_P001	Maize	endoplasmic reticulum, extracellular, golgi	47.26	45.45
CDY47648	Canola	extracellular	25.87	39.85
AT1G23890.2	Thale cress	extracellular	31.34	31.5
Bra024626.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	28.61	30.83
CDY25806	Canola	extracellular, plasma membrane, vacuole	13.18	29.94
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	27.61	29.76
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	32.09	29.45
Solyc05g005770.2.1	Tomato	nucleus	28.61	28.89
PGSC0003DMT400010568	Potato	extracellular	28.11	28.18
KRH45709	Soybean	endoplasmic reticulum	26.37	26.5
TraesCS6B01G322100.1	Wheat	plasma membrane	24.88	19.92
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	25.62	18.29
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	21.89	17.85

Protein Annotations

EnsemblPlants:TraesCS2B01G153900.1	EnsemblPlantsGene:TraesCS2B01G153900	Gene3D:2.120.10.30	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	PANTHER:PTHR13833
PANTHER:PTHR13833:SF71	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF101898	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr2B:+:121988626..121991317

Molecular Weight (calculated)

42778.0 Da

IEP (calculated)

6.315

GRAVY (calculated)

-0.050

Length

402 amino acids

Sequence
(BLAST)

001: MASPPRVLLG HTLLLISLLP LLACAGLVLE DGYTVSTVSD LNPTGTHPYA LLPRPRAGDL VLLDSAGSTL YTLPLPVSAD AGLRRLAGGA GAFGHGHPRS
101: IAVDGADNVY VADRANGSIR KVAPSGYTTT IAGGYSAGTG HRDEPAQNAT FSPDFELTYI PKICALLVAD RGNRLIRQIK LKPEDCAHEN QKGLGTTSAS
201: IIAILAALFG SIIGFYPFHE VSINRFFSRI QRQYRRTQRK AALISFSDIR NAIANSMLST VLLKLVRVSV GYLTVVLPSI RLERGVACKP SPPSPSPSPP
301: LLDLDMAGTT TPAIGLDNEA LPSTELLGDF VGFDDSDSDG SANDQEEDKE TSLDRDLWAL LDNPQGSSKK IDSMIEANLL DFSGQDNYSG VSRRLHGGSK
401: VL

Best Arabidopsis Sequence Match ( AT1G23890.2 )
(BLAST)

001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.