Factsheet for Solyc05g005770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010568	Potato	extracellular	87.19	86.53
CDY47648	Canola	extracellular	27.89	42.53
AT1G23890.2	Thale cress	extracellular	39.2	39.0
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	42.71	38.81
Bra024626.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	33.67	35.92
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	33.17	35.39
KRH45709	Soybean	endoplasmic reticulum	34.17	34.0
Os08t0414600-01	Rice	extracellular	23.12	33.45
CDY25806	Canola	extracellular, plasma membrane, vacuole	14.82	33.33
Solyc10g018280.1.1	Tomato	cytosol	5.28	29.58
TraesCS2B01G153900.1	Wheat	extracellular, plasma membrane, vacuole	28.89	28.61
EES13823	Sorghum	endoplasmic reticulum, golgi, plasma membrane	28.89	27.64
Zm00001d032308_P001	Maize	endoplasmic reticulum, extracellular, golgi	28.89	27.51
TraesCS2A01G131500.2	Wheat	extracellular, golgi, plasma membrane	28.64	27.08
Solyc10g018290.1.1	Tomato	extracellular	5.78	26.74
TraesCS2D01G133600.2	Wheat	extracellular, golgi, plasma membrane	27.64	25.82
Solyc06g048720.1.1	Tomato	endoplasmic reticulum, extracellular	6.28	21.93
Solyc05g005760.2.1	Tomato	nucleus	26.38	21.0
Solyc02g087010.2.1	Tomato	golgi	25.13	19.72
Solyc07g062300.2.1	Tomato	plasma membrane	22.36	18.58

Protein Annotations

EnsemblPlants:Solyc05g005770.2.1	EnsemblPlantsGene:Solyc05g005770.2	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:NHL_repeat
PANTHER:PTHR13833	PANTHER:PTHR13833:SF71	PFAM:PF01436	SignalP:SignalP-noTM	SUPFAM:SSF101898	TMHMM:TMhelix
UniParc:UPI0002766FF5	UniProt:K4BWA4	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5:-:586976..590980

Molecular Weight (calculated)

43677.6 Da

IEP (calculated)

7.853

GRAVY (calculated)

0.033

Length

398 amino acids

Sequence
(BLAST)

001: MASLISTLCI FFLLNISLTP VLGEVIFEDG YSVSTVIDGN KIKINPYSII PVSGDTHFII LDSSASTFYT LSYNKDSDTT VTKLTGDGIG YADGSLDKAR
101: FNKPKSFAVD SKGNIYVADM KNMHAIRKIS KSGVTTIAGG YSKTAGRADG PGLNASFSDD YELSFIPKRC ALMISDHGNR LVREIQLKAE DCSRDSHSDL
201: RAVSTWLLTV GLPCLVCLII GLVIRPYVIP NDYVSRLQHN MTWKHFLINL ERQVLMFCFV IRSVIVDSKI YSLLRQLVLL SFSHLRLMFS PKVAVARQTS
301: RRQLAPLINL HDFESKESPN SPVVANSLED LITFDGSLDN SELTTNQDDA VKGSTDVSGV DSMILANIKV FAEQGNASTG PEVSKSILSL GNQKKKVN

Best Arabidopsis Sequence Match ( AT1G23890.2 )
(BLAST)

001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.