Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13823 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 62.92 | 63.22 |
| Os08t0414600-01 | Rice | extracellular | 37.56 | 57.09 |
| TraesCS2A01G131500.2 | Wheat | extracellular, golgi, plasma membrane | 47.85 | 47.51 |
| TraesCS2B01G153900.1 | Wheat | extracellular, plasma membrane, vacuole | 45.45 | 47.26 |
| TraesCS2D01G133600.2 | Wheat | extracellular, golgi, plasma membrane | 47.61 | 46.71 |
| CDY47648 | Canola | extracellular | 24.4 | 39.08 |
| Bra024626.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 29.19 | 32.71 |
| AT1G23890.2 | Thale cress | extracellular | 30.86 | 32.25 |
| CDY59087 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 28.47 | 31.9 |
| CDY25806 | Canola | extracellular, plasma membrane, vacuole | 12.68 | 29.94 |
| VIT_01s0026g00320.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 31.1 | 29.68 |
| PGSC0003DMT400010568 | Potato | extracellular | 27.99 | 29.18 |
| Solyc05g005770.2.1 | Tomato | nucleus | 27.51 | 28.89 |
| KRH45709 | Soybean | endoplasmic reticulum | 26.08 | 27.25 |
| Zm00001d045703_P002 | Maize | plasma membrane | 23.68 | 19.57 |
| Zm00001d037307_P001 | Maize | plasma membrane, plastid, vacuole | 22.97 | 18.9 |
| Zm00001d017926_P003 | Maize | golgi | 22.97 | 18.82 |
| Zm00001d016228_P001 | Maize | plasma membrane | 22.97 | 18.64 |
| Zm00001d051759_P001 | Maize | golgi, plasma membrane, plastid | 22.97 | 18.6 |
Protein Annotations
| EMBL:BT066386 | EnsemblPlants:Zm00001d032308_P001 | EnsemblPlants:Zm00001d032308_T001 | EnsemblPlantsGene:Zm00001d032308 | EntrezGene:100276874 | Gene3D:2.120.10.30 |
| InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF71 | ProteinID:ONM04812.1 | SEG:seg |
| SignalP:SignalP-noTM | SUPFAM:SSF101898 | UniParc:UPI000195C8EC | UniProt:C0PDL7 | MapMan:35.2 | : |
Description
NHL domain-containing protein
Coordinates
chr1:+:221568089..221571113
Molecular Weight (calculated)
44868.0 Da
IEP (calculated)
9.888
GRAVY (calculated)
-0.128
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSPRHLSL FPLRLLLLLP LLAAGKPVLE DGYTVTTFAD LNPLPASGPH PYAVLPRSRA GDLLLLDSAG SALYTISLSS SPGEPRRLAG GKRGSGFNDG
101: GPGDAAFDRP RSVAVDAADN VYVADRLHGA VRKVAPSGYT TTIAGGFSSG PGHRDGPAQN ATFSPDFALV YVPKICALLV ADRGNRMVRQ INLKPEDCAH
201: EKQSGLGNTL VSFIAVLCTL LGSLIGFLAR HFYPVNEVSV NHFFSRIRKQ FLRTQRKATP ISFCDIKSAV ASFVPYTLLL KLVRLGSGYL HVMLSSVRLQ
301: QEVHRKPSRR PELHKTINAP NIGLNNKAPV PPTEQLGDLI SFAGDAGVKE DSGNADSQEG KVSSYHGDLM GLPYTPPCSV KKIDHMIEAN LSSFSSHEKR
401: CRLTVSGCSV SRRVHGDK
101: GPGDAAFDRP RSVAVDAADN VYVADRLHGA VRKVAPSGYT TTIAGGFSSG PGHRDGPAQN ATFSPDFALV YVPKICALLV ADRGNRMVRQ INLKPEDCAH
201: EKQSGLGNTL VSFIAVLCTL LGSLIGFLAR HFYPVNEVSV NHFFSRIRKQ FLRTQRKATP ISFCDIKSAV ASFVPYTLLL KLVRLGSGYL HVMLSSVRLQ
301: QEVHRKPSRR PELHKTINAP NIGLNNKAPV PPTEQLGDLI SFAGDAGVKE DSGNADSQEG KVSSYHGDLM GLPYTPPCSV KKIDHMIEAN LSSFSSHEKR
401: CRLTVSGCSV SRRVHGDK
001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.