Factsheet for Bra024626.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	92.23	92.23
AT1G23890.2	Thale cress	extracellular	63.27	59.0
Os08t0414600-01	Rice	extracellular	28.69	38.91
Solyc05g005770.2.1	Tomato	nucleus	35.92	33.67
KRH45709	Soybean	endoplasmic reticulum	35.12	32.75
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	37.8	32.19
PGSC0003DMT400010568	Potato	extracellular	34.58	32.17
Zm00001d032308_P001	Maize	endoplasmic reticulum, extracellular, golgi	32.71	29.19
TraesCS2B01G153900.1	Wheat	extracellular, plasma membrane, vacuole	30.83	28.61
EES13823	Sorghum	endoplasmic reticulum, golgi, plasma membrane	30.56	27.4
TraesCS2A01G131500.2	Wheat	extracellular, golgi, plasma membrane	30.56	27.08
TraesCS2D01G133600.2	Wheat	extracellular, golgi, plasma membrane	30.56	26.76
Bra001570.1-P	Field mustard	plastid	26.81	20.28
Bra008732.1-P	Field mustard	plasma membrane	24.4	19.65
Bra024625.1-P	Field mustard	plasma membrane	25.74	19.24
Bra016227.1-P	Field mustard	plasma membrane, vacuole	26.01	18.95
Bra003957.1-P	Field mustard	plasma membrane	24.66	18.85

Protein Annotations

EnsemblPlants:Bra024626.1	EnsemblPlants:Bra024626.1-P	EnsemblPlantsGene:Bra024626	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:IPR013017	InterPro:NHL_repeat	InterPro:NHL_repeat_subgr
PANTHER:PTHR13833	PANTHER:PTHR13833:SF71	PFAM:PF01436	PFscan:PS51125	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF101898	UniParc:UPI00025421A4	UniProt:M4E771	MapMan:35.2	:	:

Description

AT1G23890 (E=8e-164) | NHL repeat-containing protein

Coordinates

chrA09:+:23942856..23944430

Molecular Weight (calculated)

40986.7 Da

IEP (calculated)

6.124

GRAVY (calculated)

-0.013

Length

373 amino acids

Sequence
(BLAST)

001: MAWSFSSMFL LSFLVFYLVE GKQVLEDGYE VTTVVDGHKS GLNPHTVHAL PGSSNMIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGNPGY LDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKN NKAIRKISSS GYVTTIAGGI SKEFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNER IRQINLKEED CLQSSHSNLG
201: TYSLWSIGIA LSCFLGVAIG FASRPYIIRH EEVNHLSSTW KLLLIRLGEQ VRTFFSYTRN LVAGSTLSSL LSRLVMMIVS HLSLMYSAIS RLVWSMVSPL
301: FFICQPNNVA VLDKTVSLPD PEPPSHSHPQ LSLKPSDDLM DLITFDDAEE TNNAEERTDQ ETVTATSFVN VVL

Best Arabidopsis Sequence Match ( AT1G23890.2 )
(BLAST)

001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.