Factsheet for Bra024625.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
golgi 6
plasma membrane 7
endoplasmic reticulum 5
vacuole 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59085	Canola	plasma membrane	89.58	94.11
Bra003957.1-P	Field mustard	plasma membrane	70.14	71.72
AT1G23880.1	Thale cress	plasma membrane	78.16	71.56
Bra016227.1-P	Field mustard	plasma membrane, vacuole	70.54	68.75
VIT_01s0026g00330.t01	Wine grape	plasma membrane	60.72	61.71
KRG99307	Soybean	golgi	56.91	56.57
KRH74622	Soybean	plasma membrane	54.31	53.45
Solyc05g005760.2.1	Tomato	nucleus	53.31	53.2
PGSC0003DMT400010531	Potato	golgi	53.51	52.77
KRH69528	Soybean	vacuole	51.9	50.88
KRH45706	Soybean	plasma membrane	42.48	50.36
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	50.5	49.61
TraesCS6A01G291600.1	Wheat	plasma membrane	48.9	48.61
TraesCS6B01G322100.1	Wheat	plasma membrane	48.7	48.41
TraesCS6D01G272900.2	Wheat	plasma membrane	48.5	48.21
HORVU6Hr1G072950.14	Barley	golgi	49.5	47.96
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	46.09	47.62
Zm00001d017926_P003	Maize	golgi	48.5	47.45
EES07314	Sorghum	golgi, plasma membrane, vacuole	48.9	47.1
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	47.9	46.32
Os06t0269300-01	Rice	mitochondrion	47.7	46.03
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	45.49	45.13
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	45.29	44.49
EER89586	Sorghum	golgi, plasma membrane	44.09	43.39
Zm00001d045703_P002	Maize	plasma membrane	43.29	42.69
Bra008732.1-P	Field mustard	plasma membrane	39.08	42.12
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	44.49	39.71
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	44.69	39.61
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	44.69	39.12
HORVU7Hr1G042740.2	Barley	plastid	45.09	33.58
Bra001570.1-P	Field mustard	plastid	29.86	30.22
Bra024626.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	19.24	25.74

Protein Annotations

Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	EnsemblPlantsGene:Bra024625	EnsemblPlants:Bra024625.1	EnsemblPlants:Bra024625.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0009506	GO:GO:0016020
GO:GO:0016021	InterPro:IPR011042	UniProt:M4E770	InterPro:NHL_repeat	PFAM:PF01436	PANTHER:PTHR13833
PANTHER:PTHR13833:SF42	SUPFAM:SSF101898	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00025421A5	SEG:seg

Description

AT1G23880 (E=4e-173) | NHL repeat-containing protein

Coordinates

chrA09:-:23944616..23946851

Molecular Weight (calculated)

55697.9 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.441

Length

499 amino acids

Sequence
(BLAST)

001: MKRDYFLFLG VIILLFSGLV ASAPSSTSPA KIVSGFISNH GTSLMKWLWS LKTTSKTAVS TKSMVKFENG YSVETVLDGS KLGIEPYSLQ VLPNGELLIL
101: DSENSNVYKI SSSLSLYSRP RLVTGSPEGY PGHVDGRLRD ARLNNPKGLT VDDRGNIYVA DTVNNAIRKI SEGGVTTIAG GKIVRGGGGH VDGPSEDAKF
201: SNDFDVVYVG SSCSLLVVDR GNRAIREIQL HFDDCSYEYG SGFPLGIAVL IAAGFFGYML ALVQRRLGSI LSYRTDQEIY KAVPDQKPLK PVRPSLIQTG
301: DEQEEQEESF LVPLRVFMSN ARLFLAELFS GMYPGLKKKQ TVSFSFNHKE TNHSSAYSTA QWPIQESFVI HNKDEPPPPI ETRNPTPKKT YPFMSKDAES
401: IQQLRRSRSL FRSLDPEFQQ EQQHHRRHHS TIPHTHYERI SGKTSEIVFG PVQEQDQKRV AAAGTAKPTE YGDQMDSHQN LHYRAHQSVS YPYGYYSYT

Best Arabidopsis Sequence Match ( AT1G23880.1 )
(BLAST)

001: MTNVSLFYAS LSILFCCFLF FFNLSPSFFF LRLSRSVTTS FNILNIHLSH FAIRLSSTLV MSRHFLFLGI IILLFSAFVA SAPSSTSPAK IVNSFISNHG
101: TSLLKWLWSL SFKTTTKTAV PTKSMVKFEN GYSVETVLDG SKLGIEPYSI QVLSNGELLI LDSQNSNIYQ ISSSLSLYSR PRLVTGSPEG YPGHVDGRLR
201: DARLNNPKGL TVDDRGNIYV ADTVNNAIRK ISEAGVTTIA GGKMVRGGGH VDGPSEDAKF SNDFDVVYLG SSCSLLVIDR GNQAIREIQL HFDDCADQYG
301: SGFPLGIAVL VAAVFFGYML ALLQRRLSSI VSYHTDQEVF EAVPDQDPIK PVRPPLILTG DEQEKQEESF LGTLQIFISN AWVFSVELFS GMFPGLRKKQ
401: TVGLNFNHQE TKHSAFSTTS WPIQESFVIH NKDEPPPVES RNATPGKIYP FMSKDATEKM QQLRQSRALY RSLDAEFLQE QQQEKHQQYH HRHHSTIPYT
501: LYEQSSEKTN EIVFGPGQEQ DQMNTHQNIH HRAHQFVSYP YGYYS

Arabidopsis Description

At1g23880/T23E23_8 [Source:UniProtKB/TrEMBL;Acc:Q8S9K1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.