Factsheet for Zm00001d037307_P001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plasma membrane, plastid

Predictor Summary:

plastid 2
extracellular 3
golgi 3
plasma membrane 4
endoplasmic reticulum 3
vacuole 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid, vacuole
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89586	Sorghum	golgi, plasma membrane	82.68	82.84
Zm00001d045703_P002	Maize	plasma membrane	79.53	79.84
Os06t0269300-01	Rice	mitochondrion	71.46	70.21
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	69.29	62.97
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	69.69	62.88
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	69.29	61.75
Zm00001d017926_P003	Maize	golgi	60.63	60.39
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	59.65	58.72
HORVU7Hr1G042740.2	Barley	plastid	69.88	52.99
VIT_01s0026g00330.t01	Wine grape	plasma membrane	50.98	52.75
KRH74622	Soybean	plasma membrane	51.77	51.87
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	51.18	51.69
KRG99307	Soybean	golgi	50.98	51.59
KRH69528	Soybean	vacuole	50.2	50.1
VIT_14s0066g01590.t01	Wine grape	golgi	49.02	49.6
KRH45706	Soybean	plasma membrane	39.37	47.51
PGSC0003DMT400001332	Potato	golgi	46.85	47.32
Bra003957.1-P	Field mustard	plasma membrane	44.88	46.72
CDX68347	Canola	endoplasmic reticulum, plasma membrane	44.88	46.72
Solyc05g005760.2.1	Tomato	nucleus	45.67	46.4
AT1G70280.2	Thale cress	plasma membrane	46.46	46.37
CDY11605	Canola	endoplasmic reticulum, plasma membrane	44.29	46.3
Bra016227.1-P	Field mustard	plasma membrane, vacuole	46.65	46.29
Solyc02g087010.2.1	Tomato	golgi	46.06	46.15
CDY23504	Canola	plasma membrane	44.69	45.95
CDY47647	Canola	plasma membrane	43.5	45.85
CDY38803	Canola	plasma membrane, vacuole	45.87	45.78
KRG93349	Soybean	golgi, plasma membrane, vacuole	48.03	45.52
CDY59085	Canola	plasma membrane	42.52	45.47
PGSC0003DMT400010531	Potato	golgi	45.28	45.45
Bra024625.1-P	Field mustard	plasma membrane	44.49	45.29
Solyc10g018280.1.1	Tomato	cytosol	6.1	43.66
CDY09894	Canola	golgi, plasma membrane	38.58	42.33
AT5G14890.1	Thale cress	plasma membrane	39.57	41.7
CDX69553	Canola	plasma membrane	37.6	41.25
Bra008732.1-P	Field mustard	plasma membrane	37.4	41.04
AT1G23880.1	Thale cress	plasma membrane	43.31	40.37
Solyc10g018290.1.1	Tomato	extracellular	6.69	39.53
Solyc06g048720.1.1	Tomato	endoplasmic reticulum, extracellular	7.87	35.09
Zm00001d016228_P001	Maize	plasma membrane	27.17	26.8
Zm00001d032308_P001	Maize	endoplasmic reticulum, extracellular, golgi	18.9	22.97

Protein Annotations

EntrezGene:100192979	Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	ProteinID:AQK83530.1	UniProt:B6T5M8
EMBL:BT054067	EMBL:EU960293	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011042
PANTHER:PTHR13833	PANTHER:PTHR13833:SF59	SUPFAM:SSF101898	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000182D0E4
EnsemblPlantsGene:Zm00001d037307	EnsemblPlants:Zm00001d037307_P001	EnsemblPlants:Zm00001d037307_T001	SEG:seg	:	:

Description

NHL domain-containing protein

Coordinates

chr6:+:120259268..120263325

Molecular Weight (calculated)

56369.7 Da

IEP (calculated)

9.437

GRAVY (calculated)

-0.554

Length

508 amino acids

Sequence
(BLAST)

001: MAAPGRAALL AAALLFGTFF PSASSASSYP ARIAGRLLST TSSAVAKQLW SLKSAATKTA TTAVTGRSMV RYEGGYAVDT VFDGSKLGIE PHAVEITPAG
101: NLLVLDSINS NIYRVQLPLS PYSRPKLLAG SPKGLSGHVD GRLREARMNH PKGFTVDDRG NIYVADGMNM AIRKISDTGV TTIAGGKSIR GGHIDGPSDD
201: AKFSTDFEIK YISSSCSLLV IDRGNQAIRE IPLNDDDCAY QYEAGFPLGF ALLCAAGFFG YMLAMLQRRL LGMSSTTDDP QAPPRPSIAS IPPSYQKPLN
301: PYIRHPFIPR EETAKQETGE GFFTTAGKLM GGAKSSVGEI FGFKKKRLSS PYHHQQQQQR RANPWPVQES YAMTHDEPPP ALDTRAPTPQ KNYSLMRKEP
401: EKTHYVRHGH PYFNSWDGHC HPQQQPDQQL YRQQQHLQQH RQYSAGPQTF YEQSCEPTKE IVFGAVQEVD SKRRMVEIKA VNYGDTFYER YGMRYRNNFI
501: GYNNNNNY

Best Arabidopsis Sequence Match ( AT1G23880.1 )
(BLAST)

001: MTNVSLFYAS LSILFCCFLF FFNLSPSFFF LRLSRSVTTS FNILNIHLSH FAIRLSSTLV MSRHFLFLGI IILLFSAFVA SAPSSTSPAK IVNSFISNHG
101: TSLLKWLWSL SFKTTTKTAV PTKSMVKFEN GYSVETVLDG SKLGIEPYSI QVLSNGELLI LDSQNSNIYQ ISSSLSLYSR PRLVTGSPEG YPGHVDGRLR
201: DARLNNPKGL TVDDRGNIYV ADTVNNAIRK ISEAGVTTIA GGKMVRGGGH VDGPSEDAKF SNDFDVVYLG SSCSLLVIDR GNQAIREIQL HFDDCADQYG
301: SGFPLGIAVL VAAVFFGYML ALLQRRLSSI VSYHTDQEVF EAVPDQDPIK PVRPPLILTG DEQEKQEESF LGTLQIFISN AWVFSVELFS GMFPGLRKKQ
401: TVGLNFNHQE TKHSAFSTTS WPIQESFVIH NKDEPPPVES RNATPGKIYP FMSKDATEKM QQLRQSRALY RSLDAEFLQE QQQEKHQQYH HRHHSTIPYT
501: LYEQSSEKTN EIVFGPGQEQ DQMNTHQNIH HRAHQFVSYP YGYYS

Arabidopsis Description

At1g23880/T23E23_8 [Source:UniProtKB/TrEMBL;Acc:Q8S9K1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.