CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59085	Canola	plasma membrane	90.87	92.21
AT1G23880.1	Thale cress	plasma membrane	80.71	71.38
CDX68347	Canola	endoplasmic reticulum, plasma membrane	70.75	69.88
CDY23504	Canola	plasma membrane	71.37	69.64
CDY11605	Canola	endoplasmic reticulum, plasma membrane	69.5	68.93
CDY38803	Canola	plasma membrane, vacuole	70.33	66.6
VIT_01s0026g00330.t01	Wine grape	plasma membrane	61.62	60.49
KRG99307	Soybean	golgi	57.47	55.18
KRH74622	Soybean	plasma membrane	54.98	52.27
Solyc05g005760.2.1	Tomato	nucleus	53.94	52.0
PGSC0003DMT400010531	Potato	golgi	54.15	51.58
KRH69528	Soybean	vacuole	52.49	49.71
KRH45706	Soybean	plasma membrane	42.74	48.93
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	50.62	48.03
TraesCS6A01G291600.1	Wheat	plasma membrane	49.38	47.41
TraesCS6B01G322100.1	Wheat	plasma membrane	49.17	47.21
TraesCS6D01G272900.2	Wheat	plasma membrane	48.96	47.01
Zm00001d017926_P003	Maize	golgi	49.59	46.86
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	46.68	46.58
EES07314	Sorghum	golgi, plasma membrane, vacuole	50.0	46.53
HORVU6Hr1G072950.14	Barley	golgi	49.38	46.21
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	48.76	45.54
Os06t0269300-01	Rice	mitochondrion	48.13	44.87
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	46.47	44.53
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	45.85	43.5
EER89586	Sorghum	golgi, plasma membrane	44.81	42.6
CDX69553	Canola	plasma membrane	40.25	41.9
Zm00001d045703_P002	Maize	plasma membrane	43.98	41.9
CDY09894	Canola	golgi, plasma membrane	39.21	40.82
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	45.02	38.82
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	45.23	38.72
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	45.02	38.07
CDY47648	Canola	extracellular	17.84	32.95
HORVU7Hr1G042740.2	Barley	plastid	45.64	32.84
CDX82461	Canola	endoplasmic reticulum	30.91	30.35
CDX75794	Canola	plastid	30.08	29.41
CDY25806	Canola	extracellular, plasma membrane, vacuole	10.58	28.81
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	19.92	25.74

Protein Annotations

EnsemblPlants:CDY47647	EnsemblPlantsGene:GSBRNA2T00087868001	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:NHL_repeat	PANTHER:PTHR13833	PANTHER:PTHR13833:SF42	PFAM:PF01436
ProteinID:CDY47647	ProteinID:CDY47647.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF101898	TMHMM:TMhelix
UniParc:UPI0004EE462B	UniProt:A0A078IC01	MapMan:35.2	:	:	:

Description

BnaC05g19030DBnaC05g19030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC01]

Coordinates

chrLK032727:+:83223..85709

Molecular Weight (calculated)

53840.0 Da

IEP (calculated)

9.284

GRAVY (calculated)

-0.393

Length

482 amino acids

Sequence
(BLAST)

001: MKRDYFLFLG IIILLFSGLV ASAPSSTSPA KIVSGFISNH GTSLMKWLWS LKTTSKKTAV STKSMVKFEN GYSVETVLDG SKLGIEPYSL QVLPNGELLI
101: LDSENSNVYK ISSSLSLYCR PRLVTGSPEG YPGHVDGRLR DARLNNPKGL TVDDRGNIYV ADSVNNAIRK ISEAGVTTIA GGKMVRGGGG HVDGPSEAAK
201: FSNDFDVVYV GSSCSLLVVD RGNRAIREIQ LHFDDCAYEY GSDFPLGIAV LIAAGFFGYM LALLQRRLGS ILSYHTDQEI CKAVPDQKPL KPVRSSLIPT
301: GDEQEESFLV PLRVFMSNAR LFIAELFSGM YSGLKKKQTV SFSFNHQETN HSSAYSTAPW PIQESFVIHN KDEPPPPIET RNPTPKKTYP FMSKDAESIQ
401: QLRKSRSLFR SLDPEFQREQ QHHRRHHSTI PRTHYEKISG KTSEIVFGPA QEQDQKRMNS HQNLHYRAHQ SVSYPYGYYS YT

Best Arabidopsis Sequence Match ( AT1G23880.1 )
(BLAST)

001: MTNVSLFYAS LSILFCCFLF FFNLSPSFFF LRLSRSVTTS FNILNIHLSH FAIRLSSTLV MSRHFLFLGI IILLFSAFVA SAPSSTSPAK IVNSFISNHG
101: TSLLKWLWSL SFKTTTKTAV PTKSMVKFEN GYSVETVLDG SKLGIEPYSI QVLSNGELLI LDSQNSNIYQ ISSSLSLYSR PRLVTGSPEG YPGHVDGRLR
201: DARLNNPKGL TVDDRGNIYV ADTVNNAIRK ISEAGVTTIA GGKMVRGGGH VDGPSEDAKF SNDFDVVYLG SSCSLLVIDR GNQAIREIQL HFDDCADQYG
301: SGFPLGIAVL VAAVFFGYML ALLQRRLSSI VSYHTDQEVF EAVPDQDPIK PVRPPLILTG DEQEKQEESF LGTLQIFISN AWVFSVELFS GMFPGLRKKQ
401: TVGLNFNHQE TKHSAFSTTS WPIQESFVIH NKDEPPPVES RNATPGKIYP FMSKDATEKM QQLRQSRALY RSLDAEFLQE QQQEKHQQYH HRHHSTIPYT
501: LYEQSSEKTN EIVFGPGQEQ DQMNTHQNIH HRAHQFVSYP YGYYS

Arabidopsis Description

At1g23880/T23E23_8 [Source:UniProtKB/TrEMBL;Acc:Q8S9K1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.