Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024626.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 92.23 | 92.23 |
| CDY47648 | Canola | extracellular | 56.3 | 80.46 |
| AT1G23890.2 | Thale cress | extracellular | 62.47 | 58.25 |
| CDY25806 | Canola | extracellular, plasma membrane, vacuole | 23.86 | 50.28 |
| Os08t0414600-01 | Rice | extracellular | 27.35 | 37.09 |
| Solyc05g005770.2.1 | Tomato | nucleus | 35.39 | 33.17 |
| KRH45709 | Soybean | endoplasmic reticulum | 34.85 | 32.5 |
| PGSC0003DMT400010568 | Potato | extracellular | 34.05 | 31.67 |
| VIT_01s0026g00320.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 37.0 | 31.51 |
| Zm00001d032308_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 31.9 | 28.47 |
| TraesCS2B01G153900.1 | Wheat | extracellular, plasma membrane, vacuole | 29.76 | 27.61 |
| EES13823 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 30.56 | 27.4 |
| TraesCS2A01G131500.2 | Wheat | extracellular, golgi, plasma membrane | 29.76 | 26.37 |
| TraesCS2D01G133600.2 | Wheat | extracellular, golgi, plasma membrane | 29.49 | 25.82 |
| CDX75794 | Canola | plastid | 27.61 | 20.89 |
| CDX82461 | Canola | endoplasmic reticulum | 27.08 | 20.57 |
| CDY09894 | Canola | golgi, plasma membrane | 25.47 | 20.52 |
| CDY59085 | Canola | plasma membrane | 26.01 | 20.42 |
| CDX69553 | Canola | plasma membrane | 24.93 | 20.09 |
| CDY11605 | Canola | endoplasmic reticulum, plasma membrane | 26.01 | 19.96 |
| CDY47647 | Canola | plasma membrane | 25.74 | 19.92 |
| CDY38803 | Canola | plasma membrane, vacuole | 26.54 | 19.45 |
| CDX68347 | Canola | endoplasmic reticulum, plasma membrane | 25.2 | 19.26 |
| CDY23504 | Canola | plasma membrane | 25.47 | 19.23 |
Protein Annotations
| EnsemblPlants:CDY59087 | EnsemblPlantsGene:GSBRNA2T00025513001 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:IPR013017 | InterPro:NHL_repeat | InterPro:NHL_repeat_subgr | PANTHER:PTHR13833 |
| PANTHER:PTHR13833:SF71 | PFAM:PF01436 | PFscan:PS51125 | ProteinID:CDY59087 | ProteinID:CDY59087.1 | SEG:seg |
| SignalP:SignalP-noTM | SUPFAM:SSF101898 | UniParc:UPI0004EDE3A3 | UniProt:A0A078J7F5 | MapMan:35.2 | : |
Description
BnaA09g54610DBnaA09g54610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7F5]
Coordinates
chrLK033724:-:17515..19234
Molecular Weight (calculated)
40965.7 Da
IEP (calculated)
5.947
GRAVY (calculated)
-0.004
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWSFSSMFL LSFLVFYLVE GKQVLEDGYE VTTVVDGHKS GLNPHTVHAL PGSSNMIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGNPGY LDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKN NKAIRKISSS GYVTTIAGGI SKEFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLQSSHSNLG
201: TYSLWSVGIA LSCFLGVAIG FASRPYIIRH EEVNHLSSTW KLLLIRLGEQ VRTFFSYTRN LVAGSTLSSL LSRLVMMIVS HLSLMYSAIS RLVWSMVSPL
301: FFMCQPNNVA VLDKTVSLPD PEPPSHSHPQ LSLKPSDDLM DLITFDDAEE TNNAEERTDQ ETVTATSFVN VVL
101: SKPRGFAVDA KGNVYVADKN NKAIRKISSS GYVTTIAGGI SKEFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLQSSHSNLG
201: TYSLWSVGIA LSCFLGVAIG FASRPYIIRH EEVNHLSSTW KLLLIRLGEQ VRTFFSYTRN LVAGSTLSSL LSRLVMMIVS HLSLMYSAIS RLVWSMVSPL
301: FFMCQPNNVA VLDKTVSLPD PEPPSHSHPQ LSLKPSDDLM DLITFDDAEE TNNAEERTDQ ETVTATSFVN VVL
001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.