CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016227.1-P	Field mustard	plasma membrane, vacuole	97.84	97.27
CDY11605	Canola	endoplasmic reticulum, plasma membrane	92.14	96.5
CDX68347	Canola	endoplasmic reticulum, plasma membrane	85.27	88.93
CDY23504	Canola	plasma membrane	85.85	88.46
AT1G70280.2	Thale cress	plasma membrane	85.66	85.66
CDY59085	Canola	plasma membrane	66.21	70.95
CDY47647	Canola	plasma membrane	66.6	70.33
VIT_01s0026g00330.t01	Wine grape	plasma membrane	62.08	64.36
KRG99307	Soybean	golgi	58.55	59.36
Solyc05g005760.2.1	Tomato	nucleus	57.37	58.4
PGSC0003DMT400010531	Potato	golgi	57.76	58.1
KRH74622	Soybean	plasma membrane	56.97	57.2
KRH69528	Soybean	vacuole	55.4	55.4
TraesCS6A01G291600.1	Wheat	plasma membrane	53.63	54.38
TraesCS6B01G322100.1	Wheat	plasma membrane	53.63	54.38
TraesCS6D01G272900.2	Wheat	plasma membrane	53.24	53.98
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	53.83	53.94
HORVU6Hr1G072950.14	Barley	golgi	53.83	53.2
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	49.71	52.38
KRH45706	Soybean	plasma membrane	43.22	52.26
Zm00001d017926_P003	Maize	golgi	50.88	50.78
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	51.08	50.39
EES07314	Sorghum	golgi, plasma membrane, vacuole	50.88	50.0
Os06t0269300-01	Rice	mitochondrion	50.29	49.52
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	48.92	49.5
EER89586	Sorghum	golgi, plasma membrane	46.37	46.55
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	45.78	45.87
Zm00001d045703_P002	Maize	plasma membrane	44.99	45.26
CDX69553	Canola	plasma membrane	40.67	44.71
CDY09894	Canola	golgi, plasma membrane	40.47	44.49
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.15	42.93
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.35	42.81
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	46.95	41.93
HORVU7Hr1G042740.2	Barley	plastid	47.74	36.27
CDY47648	Canola	extracellular	18.07	35.25
CDX82461	Canola	endoplasmic reticulum	31.04	32.18
CDX75794	Canola	plastid	30.45	31.44
CDY25806	Canola	extracellular, plasma membrane, vacuole	9.82	28.25
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	19.45	26.54

Protein Annotations

EnsemblPlants:CDY38803	EnsemblPlantsGene:GSBRNA2T00066609001	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:IPR013017	InterPro:NHL_repeat	InterPro:NHL_repeat_subgr	PANTHER:PTHR13833
PANTHER:PTHR13833:SF42	PFAM:PF01436	PFscan:PS51125	ProteinID:CDY38803	ProteinID:CDY38803.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF101898	UniParc:UPI0004EDF810	UniProt:A0A078HPS0	MapMan:35.2	:

Description

BnaA07g28750DBnaA07g28750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPS0]

Coordinates

chrLK032432:-:316183..318660

Molecular Weight (calculated)

56809.3 Da

IEP (calculated)

6.970

GRAVY (calculated)

-0.585

Length

509 amino acids

Sequence
(BLAST)

001: MGRDFLLLST LILLLSGFVS SAPSANSPAK IINGFISNHG SSLMKWIWSL KTTSSKTTIA TRSMVKFEDG YSVETVFDGS KLGIEPYSVE VLPNGELLVL
101: DSENSNIYKI SSSLSLYSRP RLVTGSPEGY AGHVDGRLRD ARLNHPKGLA VDDRGNIYVA DTVNNAIRKI SEGGVTTIAG GKTARNGGHV DGPSEDAKFS
201: NDFDVVYLGS SCSLLVIDRG NKAIREIQLH FDDCAYQYES GFPLGMAVLV AAGFFGYMLA LLQRRVGSIV SSQNVSVLDQ ETFEGDADQK PVKPFRPSLI
301: PNGDEQLLEK HDESFLASLG NLASNAWVTV TEMLRKKQQT ATSFEQYQTK QSSAAFSTST PWPIQESFVI PEEDEPPPVE HRNQTPRKTY AFMSKDAEKM
401: QQLRQSRAFY SSWEAAEFPN QQQQQQQQKQ QQKQQHRRHY SSIPHTYYEQ NSEKTNEIVF GAVQEKSSRR AAKPKESGDQ INNNNNNTQQ NLHYRAHSVS
501: YPYGYYPYT

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.