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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 7
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68347 Canola endoplasmic reticulum, plasma membrane 94.53 95.7
CDY11605 Canola endoplasmic reticulum, plasma membrane 85.63 87.04
CDY38803 Canola plasma membrane, vacuole 88.46 85.85
AT1G70280.2 Thale cress plasma membrane 87.04 84.48
CDY59085 Canola plasma membrane 69.03 71.79
CDY47647 Canola plasma membrane 69.64 71.37
VIT_01s0026g00330.t01 Wine grape plasma membrane 63.77 64.15
KRG99307 Soybean golgi 59.72 58.76
Solyc05g005760.2.1 Tomato nucleus 58.91 58.2
PGSC0003DMT400010531 Potato golgi 59.31 57.91
KRH74622 Soybean plasma membrane 57.69 56.21
KRH69528 Soybean vacuole 55.26 53.63
KRH45706 Soybean plasma membrane 44.53 52.26
TraesCS6B01G322100.1 Wheat plasma membrane 52.43 51.59
TraesCS6D01G272900.2 Wheat plasma membrane 52.23 51.39
TraesCS6A01G291600.1 Wheat plasma membrane 52.23 51.39
Os02t0730400-01 Rice golgi, plasma membrane, vacuole 52.83 51.38
GSMUA_Achr3P12850_001 Banana endoplasmic reticulum 50.2 51.35
HORVU6Hr1G072950.14 Barley golgi 52.43 50.29
Zm00001d017926_P003 Maize golgi 50.2 48.63
EES07314 Sorghum golgi, plasma membrane, vacuole 50.61 48.26
Os06t0269300-01 Rice mitochondrion 50.4 48.16
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, plastid 48.99 48.11
Zm00001d051759_P001 Maize golgi, plasma membrane, plastid 49.39 47.29
EER89586 Sorghum golgi, plasma membrane 46.15 44.97
Zm00001d037307_P001 Maize plasma membrane, plastid, vacuole 45.95 44.69
CDX69553 Canola plasma membrane 41.3 44.06
CDY09894 Canola golgi, plasma membrane 41.09 43.84
Zm00001d045703_P002 Maize plasma membrane 44.74 43.68
TraesCS7D01G211500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 46.56 41.14
TraesCS7B01G116500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 46.76 41.03
TraesCS7A01G209600.1 Wheat endoplasmic reticulum, plasma membrane 46.56 40.35
HORVU7Hr1G042740.2 Barley plastid 46.96 34.63
CDY47648 Canola extracellular 17.61 33.33
CDX82461 Canola endoplasmic reticulum 31.38 31.57
CDX75794 Canola plastid 30.36 30.43
CDY25806 Canola extracellular, plasma membrane, vacuole 9.92 27.68
CDY59087 Canola endoplasmic reticulum, extracellular, plasma membrane 19.23 25.47
Protein Annotations
Gene3D:2.120.10.30MapMan:35.2InterPro:6-blade_b-propeller_TolB-likeGO:A0A078GDT8UniProt:A0A078GDT8EnsemblPlants:CDY23504
ProteinID:CDY23504ProteinID:CDY23504.1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00022139001InterPro:IPR011042InterPro:NHL_repeatPFAM:PF01436
PANTHER:PTHR13833PANTHER:PTHR13833:SF42SUPFAM:SSF101898SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0004EEF9A7
SEG:seg:::::
Description
BnaC06g24730DBnaC06g24730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDT8]
Coordinates
chrLK032144:+:228797..231265
Molecular Weight (calculated)
55067.3 Da
IEP (calculated)
6.758
GRAVY (calculated)
-0.542
Length
494 amino acids
Sequence
(BLAST)
001: MGREVLVVGI LILLCSEFVS SAPSANSPAK IVSGFISNHG SSLMKWLWSL KSTSTKTTIA TRSMVKFENG YTVETVFDGS KLGIEPYSIE VLPNGELLIL
101: DSENSNIYKI SSSLSLYSRP RLVTGSPEGY AGHVDGRLRD ARLNHPKGLT VDDRGNIYVA DTVNNAIRKI SEGGVTTIAG GKTARNGGHV DGQSEDAKFS
201: NDFDVVYLGS SCSLLVIDRG NKAIREIQLH FDDCAYQYGS GFPLGIAVLV AAGFFGYMLA LLQRRVGSIV SSHDQEMFEA DHDQKPSRPS LIPTGEEQQE
301: KQDESFLVSL GNLASNAWVS VMEILRIKQS AATTNFQQYQ TKQSSAAFST TAPWPIQESF VVRDEDEPPP VEHKNQTLRK TYAFMSKDAE KMQQLRQSRA
401: FYSSSWEPEF PNQQQQKQQQ QHRRHYSSIP HTHYEQNSEQ TNEIVFGAVQ EQSSKRAAKP KESGEQINNN NNTQQNLHYR AHSVSYPYGY YPYT
Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)
001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.