Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59087 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 80.46 | 56.3 |
| AT1G23890.2 | Thale cress | extracellular | 74.71 | 48.75 |
| CDY25806 | Canola | extracellular, plasma membrane, vacuole | 27.97 | 41.24 |
| Os08t0414600-01 | Rice | extracellular | 39.46 | 37.45 |
| KRH45709 | Soybean | endoplasmic reticulum | 46.74 | 30.5 |
| Solyc05g005770.2.1 | Tomato | nucleus | 42.53 | 27.89 |
| PGSC0003DMT400010568 | Potato | extracellular | 41.38 | 26.93 |
| VIT_01s0026g00320.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 43.68 | 26.03 |
| TraesCS2B01G153900.1 | Wheat | extracellular, plasma membrane, vacuole | 39.85 | 25.87 |
| Zm00001d032308_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 39.08 | 24.4 |
| EES13823 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 38.7 | 24.28 |
| TraesCS2A01G131500.2 | Wheat | extracellular, golgi, plasma membrane | 38.31 | 23.75 |
| TraesCS2D01G133600.2 | Wheat | extracellular, golgi, plasma membrane | 38.31 | 23.47 |
| CDX82461 | Canola | endoplasmic reticulum | 35.25 | 18.74 |
| CDY11605 | Canola | endoplasmic reticulum, plasma membrane | 34.87 | 18.72 |
| CDY59085 | Canola | plasma membrane | 33.72 | 18.53 |
| CDX75794 | Canola | plastid | 34.48 | 18.26 |
| CDY38803 | Canola | plasma membrane, vacuole | 35.25 | 18.07 |
| CDX68347 | Canola | endoplasmic reticulum, plasma membrane | 33.72 | 18.03 |
| CDY47647 | Canola | plasma membrane | 32.95 | 17.84 |
| CDY23504 | Canola | plasma membrane | 33.33 | 17.61 |
| CDY09894 | Canola | golgi, plasma membrane | 29.89 | 16.85 |
| CDX69553 | Canola | plasma membrane | 29.5 | 16.63 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:35.2 | InterPro:6-blade_b-propeller_TolB-like | GO:A0A078IES0 | UniProt:A0A078IES0 | EnsemblPlants:CDY47648 |
| ProteinID:CDY47648 | ProteinID:CDY47648.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00087869001 | InterPro:IPR011042 | InterPro:IPR013017 | InterPro:NHL_repeat |
| InterPro:NHL_repeat_subgr | PFAM:PF01436 | PFscan:PS51125 | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF71 | SUPFAM:SSF101898 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EDCE32 | SEG:seg | : | : |
Description
BnaC05g19040DBnaC05g19040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IES0]
Coordinates
chrLK032727:-:85827..87582
Molecular Weight (calculated)
28171.1 Da
IEP (calculated)
6.597
GRAVY (calculated)
-0.110
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWSFSSLLL FSFFVFNLVE GKPVLEDGYE VTTVVDGHKS GLNPHTVHAL PGSSNMIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGNPGY LDGNAGNSRF
101: NKPRGFAVDA KGNVYVADKN NKAIRKISSS GYVTTIAGGT SKEFGHRDGP AQNATFSSDF EITFIPQRCC LLVSDHGNEM IRQINLKEED CLQSSHSNLG
201: TYSLWSIGIA LSCFLGVAIG FASRPYIIRH TGRSEPPLVH RDVEASPNQI GGTSSDLLLL H
101: NKPRGFAVDA KGNVYVADKN NKAIRKISSS GYVTTIAGGT SKEFGHRDGP AQNATFSSDF EITFIPQRCC LLVSDHGNEM IRQINLKEED CLQSSHSNLG
201: TYSLWSIGIA LSCFLGVAIG FASRPYIIRH TGRSEPPLVH RDVEASPNQI GGTSSDLLLL H
001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH TGRSEPPLVH HDMEASPNQI GGTSSDLLLL H
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH TGRSEPPLVH HDMEASPNQI GGTSSDLLLL H
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.