Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
- peroxisome 1
- mitochondrion 1
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
28499913
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47648 | Canola | extracellular | 30.5 | 46.74 |
| AT1G23890.2 | Thale cress | extracellular | 36.5 | 36.5 |
| Os08t0414600-01 | Rice | extracellular | 24.75 | 36.0 |
| VIT_01s0026g00320.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 38.75 | 35.39 |
| Bra024626.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 32.75 | 35.12 |
| CDY59087 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.5 | 34.85 |
| Solyc05g005770.2.1 | Tomato | nucleus | 34.0 | 34.17 |
| CDY25806 | Canola | extracellular, plasma membrane, vacuole | 15.0 | 33.9 |
| PGSC0003DMT400010568 | Potato | extracellular | 32.5 | 32.42 |
| EES13823 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 29.25 | 28.12 |
| TraesCS2B01G153900.1 | Wheat | extracellular, plasma membrane, vacuole | 26.5 | 26.37 |
| TraesCS2A01G131500.2 | Wheat | extracellular, golgi, plasma membrane | 27.5 | 26.13 |
| Zm00001d032308_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 27.25 | 26.08 |
| TraesCS2D01G133600.2 | Wheat | extracellular, golgi, plasma membrane | 26.0 | 24.41 |
| KRH69528 | Soybean | vacuole | 25.25 | 19.84 |
| KRG99307 | Soybean | golgi | 24.0 | 19.12 |
| KRH74622 | Soybean | plasma membrane | 24.0 | 18.93 |
| KRH45706 | Soybean | plasma membrane | 19.25 | 18.29 |
| KRG93349 | Soybean | golgi, plasma membrane, vacuole | 23.25 | 17.35 |
| KRH21938 | Soybean | vacuole | 21.5 | 17.1 |
| KRH27368 | Soybean | plastid | 17.25 | 16.08 |
Protein Annotations
| EMBL:ACUP02005277 | EnsemblPlants:KRH45709 | EnsemblPlantsGene:GLYMA_08G288900 | EntrezGene:100816542 | Gene3D:2.120.10.30 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF71 |
| ProteinID:KRH45709 | ProteinID:KRH45709.1 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF101898 | TMHMM:TMhelix |
| UniParc:UPI00023386FB | UniProt:I1KXI5 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:40147520..40151375
Molecular Weight (calculated)
44108.1 Da
IEP (calculated)
8.538
GRAVY (calculated)
-0.037
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLSTFLTL TLFFLSHVNA KEIVITEEGY TVTTVFDGHK PHIFPFTVLQ RPFSSDLILL DSVNSTFYTA QFPITEESVF TRLSGDGSVG YSDGDVGSAR
101: FAKPRSFAFD MRGNVYVADK SNRAIRKISA KGVTTIAGGE FSEKSRTKDG PALNASFSND FDLTFIPGLC ALLVSDHMHR LVRQINLMEE DCTLGSKPGL
201: GAVMTWTLGL GLSCLLGLVI GIVVRPYIIP NKGTNPCHFT ETWKRYLTSL GKLAQTLFFG AKSAIASCSC SSVYKILMSF WRLSLSHLVC MSRIRINIVS
301: PRPHLESVSL LDLDACNSGE VTKSGKYYDQ LKDLMSFDED SNNGKATFNK GNDSIGRRNV CYEGDVMMKA NMGFVETPKD NNNIVRQESS VCKMGIVKRR
101: FAKPRSFAFD MRGNVYVADK SNRAIRKISA KGVTTIAGGE FSEKSRTKDG PALNASFSND FDLTFIPGLC ALLVSDHMHR LVRQINLMEE DCTLGSKPGL
201: GAVMTWTLGL GLSCLLGLVI GIVVRPYIIP NKGTNPCHFT ETWKRYLTSL GKLAQTLFFG AKSAIASCSC SSVYKILMSF WRLSLSHLVC MSRIRINIVS
301: PRPHLESVSL LDLDACNSGE VTKSGKYYDQ LKDLMSFDED SNNGKATFNK GNDSIGRRNV CYEGDVMMKA NMGFVETPKD NNNIVRQESS VCKMGIVKRR
001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.