CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0106g00480.t01	Wine grape	cytosol	12.33	83.78
VIT_13s0106g00460.t01	Wine grape	cytosol	23.06	78.38
KRH27368	Soybean	plastid	60.84	71.33
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	57.06	59.3
Solyc07g062300.2.1	Tomato	plasma membrane	51.29	53.86
PGSC0003DMT400018285	Potato	endoplasmic reticulum	51.09	53.65
GSMUA_Achr7P13840_001	Banana	golgi	50.7	53.46
Bra001570.1-P	Field mustard	plastid	50.7	51.72
CDX82461	Canola	endoplasmic reticulum	50.3	51.53
CDX75794	Canola	plastid	50.3	51.32
AT3G14860.2	Thale cress	plastid, vacuole	49.3	50.3
Os02t0234200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	47.32	48.28
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	47.12	48.07
TraesCS6D01G181800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.52	47.46
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.73	46.65
OQU84683	Sorghum	golgi	45.53	46.26
Zm00001d016228_P001	Maize	plasma membrane	44.53	43.5
HORVU6Hr1G045970.15	Barley	endoplasmic reticulum, plasma membrane	45.73	43.48
KRG99307	Soybean	golgi	31.61	31.67
KRH74622	Soybean	plasma membrane	31.21	30.97
KRH69528	Soybean	vacuole	30.62	30.26
KRG93349	Soybean	golgi, plasma membrane, vacuole	31.61	29.66
KRH45706	Soybean	plasma membrane	23.06	27.55
KRH45709	Soybean	endoplasmic reticulum	17.1	21.5

Protein Annotations

EMBL:ACUP02008373	EnsemblPlants:KRH21938	EnsemblPlantsGene:GLYMA_13G268500	EntrezGene:100797841	Gene3D:2.120.10.30	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:NHL_repeat	PANTHER:PTHR13833
PANTHER:PTHR13833:SF73	PFAM:PF01436	ProteinID:KRH21938	ProteinID:KRH21938.1	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF101898	TMHMM:TMhelix	UniParc:UPI00023CF9CA	UniProt:I1M2Z0	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr13:-:37083071..37086914

Molecular Weight (calculated)

55692.7 Da

IEP (calculated)

9.086

GRAVY (calculated)

-0.515

Length

503 amino acids

Sequence
(BLAST)

001: MRNHIFFLFV LIALAPTFSL HLQSHAAPAG PLIKHISSLI KWTRSTSKTP HSDGNVLQFE NGYVVETVVE GNEIGVVPYR IRVSEEDGEL FAVDAINSNI
101: VRITPPLSQY SRGRLVAGSF QGYTGHVDGK PSDARFNHPK GITVDDKGNV YVADTQNLAI RKIGDAGVTT IAGGKSNVAG YRDGPSEDAK FSNDFDVVYV
201: RPTCSLLVID RGNAALRQIS LDQEDCDYQS NSISSTDILT VVGAVIVGYA TCMLQQGFGS SFFSKTQQPS QKQFKGLASN EKHMPILESS KEEPGWPSFG
301: QLIVDLSKLS LEALASTFIQ FIPSHFRPSN SKRGLTPLKD RLVMPEDDVP PPLVNRQNAQ GHTPLTENRM ASQVHTPLTE NRMASQVHTP TIAEKYSEMK
401: PPKIKSSSFK DPSMSSKHRS SRRPEYAEFY GSSEIPPYTK SKSQKERPRH RQREKSGEVV MGAVGAEAKP VETRAVDHNN PKFDHYSMRT KYASEETFRF
501: NSQ

Best Arabidopsis Sequence Match ( AT3G14860.2 )
(BLAST)

001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.