Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400018285 | Potato | endoplasmic reticulum | 97.7 | 97.7 |
| VIT_13s0106g00480.t01 | Wine grape | cytosol | 12.53 | 81.08 |
| VIT_13s0106g00460.t01 | Wine grape | cytosol | 24.01 | 77.7 |
| VIT_19s0014g01010.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 58.46 | 57.85 |
| GSMUA_Achr7P13840_001 | Banana | golgi | 53.24 | 53.46 |
| KRH21938 | Soybean | vacuole | 53.86 | 51.29 |
| AT3G14860.2 | Thale cress | plastid, vacuole | 52.61 | 51.12 |
| Bra001570.1-P | Field mustard | plastid | 50.94 | 49.49 |
| CDX75794 | Canola | plastid | 50.73 | 49.29 |
| CDX82461 | Canola | endoplasmic reticulum | 50.52 | 49.29 |
| OQU84683 | Sorghum | golgi | 47.18 | 45.66 |
| Os02t0234200-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 46.76 | 45.44 |
| TraesCS6D01G181800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 46.35 | 45.03 |
| TraesCS6B01G235400.1 | Wheat | endoplasmic reticulum | 46.14 | 44.83 |
| KRH27368 | Soybean | plastid | 39.67 | 44.29 |
| TraesCS6A01G194600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 45.3 | 44.02 |
| Zm00001d016228_P001 | Maize | plasma membrane | 45.51 | 42.33 |
| HORVU6Hr1G045970.15 | Barley | endoplasmic reticulum, plasma membrane | 45.09 | 40.83 |
| Solyc10g018280.1.1 | Tomato | cytosol | 4.18 | 28.17 |
| Solyc05g005760.2.1 | Tomato | nucleus | 29.23 | 28.0 |
| Solyc02g087010.2.1 | Tomato | golgi | 29.44 | 27.81 |
| Solyc10g018290.1.1 | Tomato | extracellular | 4.59 | 25.58 |
| Solyc05g005770.2.1 | Tomato | nucleus | 18.58 | 22.36 |
| Solyc06g048720.1.1 | Tomato | endoplasmic reticulum, extracellular | 5.01 | 21.05 |
Protein Annotations
| EnsemblPlants:Solyc07g062300.2.1 | EnsemblPlantsGene:Solyc07g062300.2 | Gene3D:2.120.10.30 | InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | PANTHER:PTHR13833 |
| PANTHER:PTHR13833:SF73 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF101898 | TMHMM:TMhelix | UniParc:UPI000276B668 |
| UniProt:K4CGR3 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:65062768..65066658
Molecular Weight (calculated)
52830.6 Da
IEP (calculated)
8.624
GRAVY (calculated)
-0.420
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNSFLFFSL IAFFIAYLQF QVHAAAPAGP LIKHLNSILK WSRSTSKTPQ SDGNFLQFEE GYLVETVVEG NELGVVPYKI RVSEDGELFA VDAINSKIVR
101: ITPPLSQYSR ARLVAGSFQG HTGHVDGKPS DARFKNPKGA TMDDKGNIYV ADTSNLAIRK IGEAGVTTIA GGKSNVPGYR DGPSEDAQFS SDFDVIYVRP
201: TCSLLVVDRG NAALRQISLS QEDCDYQYSS VSTIDVLMVI GAIIIGYAAC MLQQGFGSKT QVRVEVEQEE PSLLKEKPTP VVETVKDEQE AGWPSFGQLL
301: WDLAKLAIEG LGSLFGYAVP LRYRPKSFIR PGLTPLKDSL IMPEDEVEPP LVQKQRAPPP ASEIRHVPAV GDKVVPEGKP TKIRSSSSKD PNLSTKHRSS
401: RRHEYAEYYG ASGEVPSYVH VRSKSQKERT KHRRHDSSVG AAGVETKPAD QPKAVNYEDP KFAHYSMRNK YGDSFPRYA
101: ITPPLSQYSR ARLVAGSFQG HTGHVDGKPS DARFKNPKGA TMDDKGNIYV ADTSNLAIRK IGEAGVTTIA GGKSNVPGYR DGPSEDAQFS SDFDVIYVRP
201: TCSLLVVDRG NAALRQISLS QEDCDYQYSS VSTIDVLMVI GAIIIGYAAC MLQQGFGSKT QVRVEVEQEE PSLLKEKPTP VVETVKDEQE AGWPSFGQLL
301: WDLAKLAIEG LGSLFGYAVP LRYRPKSFIR PGLTPLKDSL IMPEDEVEPP LVQKQRAPPP ASEIRHVPAV GDKVVPEGKP TKIRSSSSKD PNLSTKHRSS
401: RRHEYAEYYG ASGEVPSYVH VRSKSQKERT KHRRHDSSVG AAGVETKPAD QPKAVNYEDP KFAHYSMRNK YGDSFPRYA
001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]
SUBAcon: [plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.