Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 7
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0106g00480.t01 | Wine grape | cytosol | 12.79 | 82.43 |
| VIT_13s0106g00460.t01 | Wine grape | cytosol | 23.9 | 77.03 |
| Os02t0234200-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 62.68 | 60.65 |
| TraesCS6D01G181800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 61.01 | 59.03 |
| TraesCS6A01G194600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 60.17 | 58.22 |
| TraesCS6B01G235400.1 | Wheat | endoplasmic reticulum | 59.75 | 57.81 |
| VIT_19s0014g01010.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 57.86 | 57.02 |
| OQU84683 | Sorghum | golgi | 59.12 | 56.97 |
| Zm00001d016228_P001 | Maize | plasma membrane | 59.33 | 54.95 |
| HORVU6Hr1G045970.15 | Barley | endoplasmic reticulum, plasma membrane | 59.54 | 53.69 |
| Solyc07g062300.2.1 | Tomato | plasma membrane | 53.46 | 53.24 |
| PGSC0003DMT400018285 | Potato | endoplasmic reticulum | 53.25 | 53.03 |
| KRH21938 | Soybean | vacuole | 53.46 | 50.7 |
| Bra001570.1-P | Field mustard | plastid | 49.48 | 47.87 |
| KRH27368 | Soybean | plastid | 42.35 | 47.09 |
| CDX82461 | Canola | endoplasmic reticulum | 48.43 | 47.05 |
| CDX75794 | Canola | plastid | 46.75 | 45.23 |
| AT3G14860.2 | Thale cress | plastid, vacuole | 46.33 | 44.83 |
| GSMUA_Achr3P12850_001 | Banana | endoplasmic reticulum | 31.24 | 30.85 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 31.45 | 29.82 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P13840_001 | EnsemblPlants:GSMUA_Achr7T13840_001 | EnsemblPlantsGene:GSMUA_Achr7G13840_001 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:NHL_repeat | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF73 |
| PFAM:PF01436 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF101898 | UniParc:UPI0002951AC9 | UniProt:M0THC1 |
| MapMan:35.2 | : | : | : | : | : |
Description
NHL repeat-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G13840_001]
Coordinates
chr7:+:11094100..11099116
Molecular Weight (calculated)
51999.7 Da
IEP (calculated)
8.925
GRAVY (calculated)
-0.390
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRSLRLLVL LLAAASAAFL GSKAQATPTG AIVKHLSSVL KWTKPSPKTT HHDGDVVEFE SGYFVETLVE GDKLGVVPHT IRVSPEGELF AVDATNNNIV
101: RITPPLSQYS RARLVAGSFQ GYSGHVDGKP SDARFYHPKG VTMDDKGNVY VADTSNLAIR KIGEAGVTTI AGGKSNIAGY RDGPSEDAKF STDFDVVYVG
201: RTCSLLVVDR GNAALRQISL QQEDCEYQYS SVSTSDIIMV IGAVLAGYVS CLLQHGFGPL ISHKNQAFES AQHEGNSLEK PTLVVETLKE EPGAGWPSLG
301: RLLVDLSKFA VEGIGNMLLN LVPFGLCRKR SAGLTPLKDH LVMPEDKAVP PVVQKQKSPS PMSETLHEPN VVTETAPKPQ KSSKVPKFKD PSLPSKHRSS
401: KRQEYADFYG SVEAQVSSKP QKDRVRHRHR DKSSEALFGA VGTEPKSVEM KSADYSDPKF DHYNIRSKYG PDNTFRY
101: RITPPLSQYS RARLVAGSFQ GYSGHVDGKP SDARFYHPKG VTMDDKGNVY VADTSNLAIR KIGEAGVTTI AGGKSNIAGY RDGPSEDAKF STDFDVVYVG
201: RTCSLLVVDR GNAALRQISL QQEDCEYQYS SVSTSDIIMV IGAVLAGYVS CLLQHGFGPL ISHKNQAFES AQHEGNSLEK PTLVVETLKE EPGAGWPSLG
301: RLLVDLSKFA VEGIGNMLLN LVPFGLCRKR SAGLTPLKDH LVMPEDKAVP PVVQKQKSPS PMSETLHEPN VVTETAPKPQ KSSKVPKFKD PSLPSKHRSS
401: KRQEYADFYG SVEAQVSSKP QKDRVRHRHR DKSSEALFGA VGTEPKSVEM KSADYSDPKF DHYNIRSKYG PDNTFRY
001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]
SUBAcon: [plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.