Factsheet for GSMUA_Achr3P12850_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g00330.t01	Wine grape	plasma membrane	55.28	54.38
KRG99307	Soybean	golgi	54.66	52.59
Solyc05g005760.2.1	Tomato	nucleus	53.42	51.6
KRH74622	Soybean	plasma membrane	54.04	51.48
PGSC0003DMT400010531	Potato	golgi	53.62	51.19
Bra003957.1-P	Field mustard	plasma membrane	51.55	51.02
CDY11605	Canola	endoplasmic reticulum, plasma membrane	50.93	50.62
CDX68347	Canola	endoplasmic reticulum, plasma membrane	51.14	50.61
CDY23504	Canola	plasma membrane	51.35	50.2
VIT_14s0066g01590.t01	Wine grape	golgi	51.76	49.8
AT1G70280.2	Thale cress	plasma membrane	52.38	49.71
CDY38803	Canola	plasma membrane, vacuole	52.38	49.71
Bra016227.1-P	Field mustard	plasma membrane, vacuole	52.38	49.41
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	51.35	49.3
KRH69528	Soybean	vacuole	51.35	48.72
KRH45706	Soybean	plasma membrane	42.03	48.22
CDY59085	Canola	plasma membrane	47.0	47.79
CDY47647	Canola	plasma membrane	46.58	46.68
Solyc10g018280.1.1	Tomato	cytosol	6.83	46.48
Bra024625.1-P	Field mustard	plasma membrane	47.62	46.09
KRG93349	Soybean	golgi, plasma membrane, vacuole	51.14	46.08
Solyc10g018290.1.1	Tomato	extracellular	8.07	45.35
PGSC0003DMT400001332	Potato	golgi	47.0	45.13
Solyc02g087010.2.1	Tomato	golgi	47.0	44.77
Solyc06g048720.1.1	Tomato	endoplasmic reticulum, extracellular	10.56	44.74
AT1G23880.1	Thale cress	plasma membrane	47.0	41.65
CDY09894	Canola	golgi, plasma membrane	39.75	41.47
Bra008732.1-P	Field mustard	plasma membrane	39.75	41.47
AT5G14890.1	Thale cress	plasma membrane	40.79	40.87
CDX69553	Canola	plasma membrane	39.13	40.82
GSMUA_Achr7P13840_001	Banana	golgi	30.85	31.24

Protein Annotations

Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr3G12850_001	EnsemblPlants:GSMUA_Achr3P12850_001	EnsemblPlants:GSMUA_Achr3T12850_001
InterPro:IPR011042	InterPro:IPR013017	UniProt:M0SE52	InterPro:NHL_repeat	InterPro:NHL_repeat_subgr	PFAM:PF01436
PFscan:PS51125	PANTHER:PTHR13833	PANTHER:PTHR13833:SF42	SUPFAM:SSF101898	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0002956F97	SEG:seg	:	:	:	:

Description

NHL repeat-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G12850_001]

Coordinates

chr3:+:9490538..9495720

Molecular Weight (calculated)

53397.0 Da

IEP (calculated)

7.661

GRAVY (calculated)

-0.417

Length

483 amino acids

Sequence
(BLAST)

001: MEEAKKKAMV LLFLVVLSGG FCSVSAASPA RLVSAFVSNL LSALLRRLWS LTPSTGNAIL NRSSVKFESG YNVETVFDGS KLGIEPFSVG VMPSGDLLVL
101: DSLNSNIYRV SLPLSKYSRP KLVAGSAEGY TGHVDGKPRG ARMNHPKGLA VDDKGNIYVA DTKNKAIRKV SDTVGVTTIA GGKSNKGGHV DGPSEDATFS
201: SDFEVVYIGS GCSLLVVDRG NKAIREIQLH FDDCAYQYGT GFPLGIAMLF AAGFFGYMLA MLQQRWAVVV SSTNDPTSPT EASYLSSPYQ QPMNSSLRPP
301: LIPPEAEYRK HEEDEGLFTS VKKLVTGAGL SLSLMISGIF LRKRSQSYHQ EQQKQQRKAN SWPLQESFIV PDEEPPPVEA QTPNQQRKTY AFMSKNLEKV
401: QQLRNDRAYF NGWDGESQPQ QHLQKHRQLS SSPQTYYEPT YETTDEVVFG AVQESDSKYD IAPSYDQYGP RYRVSYLGHY NDY

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.