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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g018290.1.1 Tomato extracellular 70.18 93.02
Solyc10g018280.1.1 Tomato cytosol 57.02 91.55
Solyc05g005760.2.1 Tomato nucleus 74.56 17.0
GSMUA_Achr3P12850_001 Banana endoplasmic reticulum 44.74 10.56
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, plastid 43.86 9.94
Solyc02g087010.2.1 Tomato golgi 43.86 9.86
Os02t0730400-01 Rice golgi, plasma membrane, vacuole 41.23 9.25
TraesCS6A01G291600.1 Wheat plasma membrane 40.35 9.16
TraesCS6D01G272900.2 Wheat plasma membrane 39.47 8.96
TraesCS6B01G322100.1 Wheat plasma membrane 39.47 8.96
HORVU6Hr1G072950.14 Barley golgi 39.47 8.74
Zm00001d051759_P001 Maize golgi, plasma membrane, plastid 39.47 8.72
EES07314 Sorghum golgi, plasma membrane, vacuole 38.6 8.49
Zm00001d017926_P003 Maize golgi 37.72 8.43
Os06t0269300-01 Rice mitochondrion 36.84 8.12
Zm00001d037307_P001 Maize plasma membrane, plastid, vacuole 35.09 7.87
TraesCS7D01G211500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 38.6 7.87
TraesCS7B01G116500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 38.6 7.82
TraesCS7A01G209600.1 Wheat endoplasmic reticulum, plasma membrane 38.6 7.72
EER89586 Sorghum golgi, plasma membrane 32.46 7.3
Zm00001d045703_P002 Maize plasma membrane 30.7 6.92
HORVU7Hr1G042740.2 Barley plastid 38.6 6.57
Solyc05g005770.2.1 Tomato nucleus 21.93 6.28
Solyc07g062300.2.1 Tomato plasma membrane 21.05 5.01
Protein Annotations
EnsemblPlants:Solyc06g048720.1.1EnsemblPlantsGene:Solyc06g048720.1PANTHER:PTHR13833PANTHER:PTHR13833:SF42SignalP:SignalP-noTMUniParc:UPI0002766731
UniProt:K4C5B8MapMan:35.2::::
Description
No Description!
Coordinates
chr6:+:31550350..31550694
Molecular Weight (calculated)
12605.4 Da
IEP (calculated)
6.545
GRAVY (calculated)
0.216
Length
114 amino acids
Sequence
(BLAST)
001: MAVKFSTSIL IFVFLSAAFC SVPATPSPAK ILNGVVSNAI TKLMKWVWSL KANTKTVISG RPMMKFESGY SVETVFDGSK LGIEPYSVEI MSGWWLDQPM
101: DTLDMLTENC GRQE
Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)
001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.