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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 6
  • golgi 6
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d045703_P002 Maize plasma membrane 90.73 90.91
Zm00001d037307_P001 Maize plasma membrane, plastid, vacuole 82.84 82.68
Os06t0269300-01 Rice mitochondrion 76.92 75.44
TraesCS7B01G116500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 74.56 67.14
TraesCS7D01G211500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 73.77 66.91
TraesCS7A01G209600.1 Wheat endoplasmic reticulum, plasma membrane 74.16 65.96
EES07314 Sorghum golgi, plasma membrane, vacuole 64.5 63.13
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, plastid 55.62 56.06
HORVU7Hr1G042740.2 Barley plastid 73.96 55.97
VIT_01s0026g00330.t01 Wine grape plasma membrane 52.47 54.18
KRG99307 Soybean golgi 51.87 52.39
KRH74622 Soybean plasma membrane 51.28 51.28
VIT_14s0066g01590.t01 Wine grape golgi 50.49 51.0
KRH69528 Soybean vacuole 49.7 49.51
KRH45706 Soybean plasma membrane 41.03 49.41
PGSC0003DMT400001332 Potato golgi 47.73 48.11
Solyc05g005760.2.1 Tomato nucleus 46.75 47.4
AT1G70280.2 Thale cress plasma membrane 47.14 46.95
Solyc02g087010.2.1 Tomato golgi 46.94 46.94
CDX68347 Canola endoplasmic reticulum, plasma membrane 44.97 46.72
Bra003957.1-P Field mustard plasma membrane 44.97 46.72
CDY11605 Canola endoplasmic reticulum, plasma membrane 44.58 46.5
Bra016227.1-P Field mustard plasma membrane, vacuole 46.94 46.48
CDY38803 Canola plasma membrane, vacuole 46.55 46.37
PGSC0003DMT400010531 Potato golgi 46.15 46.25
CDY23504 Canola plasma membrane 44.97 46.15
KRG93349 Soybean golgi, plasma membrane, vacuole 48.13 45.52
CDY59085 Canola plasma membrane 42.6 45.47
CDY47647 Canola plasma membrane 42.6 44.81
Bra024625.1-P Field mustard plasma membrane 43.39 44.09
CDY09894 Canola golgi, plasma membrane 39.65 43.41
AT5G14890.1 Thale cress plasma membrane 41.03 43.15
CDX69553 Canola plasma membrane 39.05 42.76
Bra008732.1-P Field mustard plasma membrane 39.05 42.76
Solyc10g018280.1.1 Tomato cytosol 5.72 40.85
AT1G23880.1 Thale cress plasma membrane 43.39 40.37
Solyc10g018290.1.1 Tomato extracellular 6.11 36.05
Solyc06g048720.1.1 Tomato endoplasmic reticulum, extracellular 7.3 32.46
OQU84683 Sorghum golgi 27.42 28.08
EES13823 Sorghum endoplasmic reticulum, golgi, plasma membrane 18.54 22.6
Protein Annotations
EnsemblPlants:EER89586EnsemblPlantsGene:SORBI_3010G112700EntrezGene:8061543Gene3D:2.120.10.30GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:6-blade_b-propeller_TolB-likeInterPro:IPR011042PANTHER:PTHR13833PANTHER:PTHR13833:SF59ProteinID:EER89586
ProteinID:EER89586.1RefSeq:XP_002438219.1SEG:segSignalP:SignalP-noTMSUPFAM:SSF101898TMHMM:TMhelix
UniParc:UPI0001A89A22UniProt:C5Z8F9MapMan:35.2:::
Description
hypothetical protein
Coordinates
chr10:-:11667038..11671392
Molecular Weight (calculated)
56083.2 Da
IEP (calculated)
8.491
GRAVY (calculated)
-0.464
Length
507 amino acids
Sequence
(BLAST)
001: MVAMAAPGRA ALLAVALLFA AFFPSASAAS SYPARIAGRL LSTTASAVAK QLWSLKSAAT KTATAAVAAR PKVRYEGGYA VDTVFDGSKL GIEPHAVEIT
101: PAGDLLVLDS INSNIYRVQL PLSPYSRPKL LAGSPEGLSG HVDGRLREAR MNHPNGFTVD DKGNIYVADA MNMAIRKISD TGVTTIAGGK SIRGGHIDGP
201: SDDAKFSTDF EIQYISSSCS LLVIDRGNQA IREIPLNDDD CAYQYETGFP LGFALLCAAG FFGYMLALLQ RRLFGMASTT DEPQAPPRPS IASIPPYQKP
301: LNPYVRQPFI PREETAKQET EEGFFTSAGK LIGGAKSSVA EIFGLKKKRL SNPYHQQQRR ANPWPVQESY AIPHDEHPPA LDTRAPTPQK NYSLMTKEPE
401: KIHYVRHGHP YFNSWDGHRH PQQQPDPQLY HQQQHLQQHR QYSAGPQTFY EQSCEATNEI VFGAVQEVDS KRRMVEIKAV NYGDTFYEQY GMRYRNNFIG
501: YNNNNNY
Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)
001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.