Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 7
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016228_P001 | Maize | plasma membrane | 82.02 | 78.83 |
| VIT_13s0106g00480.t01 | Wine grape | cytosol | 11.31 | 75.68 |
| Os02t0234200-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 71.72 | 72.01 |
| VIT_13s0106g00460.t01 | Wine grape | cytosol | 20.61 | 68.92 |
| TraesCS6D01G181800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 66.46 | 66.73 |
| TraesCS6B01G235400.1 | Wheat | endoplasmic reticulum | 66.26 | 66.53 |
| TraesCS6A01G194600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 65.86 | 66.13 |
| HORVU6Hr1G045970.15 | Barley | endoplasmic reticulum, plasma membrane | 66.06 | 61.81 |
| GSMUA_Achr7P13840_001 | Banana | golgi | 56.97 | 59.12 |
| VIT_19s0014g01010.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 46.67 | 47.73 |
| Solyc07g062300.2.1 | Tomato | plasma membrane | 45.66 | 47.18 |
| PGSC0003DMT400018285 | Potato | endoplasmic reticulum | 45.05 | 46.56 |
| KRH21938 | Soybean | vacuole | 46.26 | 45.53 |
| Bra001570.1-P | Field mustard | plastid | 43.03 | 43.2 |
| CDX82461 | Canola | endoplasmic reticulum | 42.42 | 42.77 |
| KRH27368 | Soybean | plastid | 36.36 | 41.96 |
| AT3G14860.2 | Thale cress | plastid, vacuole | 41.62 | 41.78 |
| CDX75794 | Canola | plastid | 41.41 | 41.58 |
| EES07314 | Sorghum | golgi, plasma membrane, vacuole | 29.49 | 28.19 |
| EER89586 | Sorghum | golgi, plasma membrane | 28.08 | 27.42 |
| EES13823 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 20.2 | 24.04 |
Protein Annotations
| EnsemblPlants:OQU84683 | EnsemblPlantsGene:SORBI_3004G102900 | EntrezGene:8073818 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:NHL_repeat | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF73 |
| PFAM:PF01436 | ProteinID:OQU84683 | ProteinID:OQU84683.1 | RefSeq:XP_002451835.1 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF101898 | UniParc:UPI0001A85930 | UniProt:A0A1Z5RLR8 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr4:+:9666921..9672711
Molecular Weight (calculated)
53183.2 Da
IEP (calculated)
9.176
GRAVY (calculated)
-0.378
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLRSPLLLV LLLAAAAFRP GAAAFAPPTG SIVKQLSSVV RWPRGGGPST HGPKLPGHSQ YADGHVGVSL QFESGYFVET LVEGDKLGVT PHTIRVSPVE
101: GGELLAVDSA HSNIVRITPP LSEYSRGRLV AGSFQGHSGH IDGKPSDARF KRPTGVAVDD MGNVYVADTA NLAIRKIGES GVTTIAGGKS NIPGYRDGPS
201: EDAKFSTDFD VVYVKKMCSL LVIDRGNAAL RKISLPQEDC TYQDSALLSS DLILVIGAVV AGYIFSGFQH GFGFSGSEKV EAPENEQHES STIGKPPLVV
301: ESLKEEPGAG WPSLGTLIAD LLKLAIEGVG KLLLSVVPQR MQHGKKKTDL TPLRDRLVMP EDREETPAAQ KLSSTPMRPE TVHAPNAVPE TAVKAQKSIK
401: SSSKFRDSTL SSKHRSSKRQ EYADFYGTSE PAPVGAKVPK DRLRHRHHRE KSGEVAYGAA HPDLKPAEAK PADYSDPKYD PYMRSKYAAE SGYRY
101: GGELLAVDSA HSNIVRITPP LSEYSRGRLV AGSFQGHSGH IDGKPSDARF KRPTGVAVDD MGNVYVADTA NLAIRKIGES GVTTIAGGKS NIPGYRDGPS
201: EDAKFSTDFD VVYVKKMCSL LVIDRGNAAL RKISLPQEDC TYQDSALLSS DLILVIGAVV AGYIFSGFQH GFGFSGSEKV EAPENEQHES STIGKPPLVV
301: ESLKEEPGAG WPSLGTLIAD LLKLAIEGVG KLLLSVVPQR MQHGKKKTDL TPLRDRLVMP EDREETPAAQ KLSSTPMRPE TVHAPNAVPE TAVKAQKSIK
401: SSSKFRDSTL SSKHRSSKRQ EYADFYGTSE PAPVGAKVPK DRLRHRHHRE KSGEVAYGAA HPDLKPAEAK PADYSDPKYD PYMRSKYAAE SGYRY
001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]
SUBAcon: [plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.