Factsheet for VIT_13s0106g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0106g00460.t01	Wine grape	cytosol	95.95	47.97
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	89.19	13.64
GSMUA_Achr7P13840_001	Banana	golgi	82.43	12.79
AT3G14860.2	Thale cress	plastid, vacuole	85.14	12.78
CDX82461	Canola	endoplasmic reticulum	83.78	12.63
Bra001570.1-P	Field mustard	plastid	83.78	12.58
CDX75794	Canola	plastid	83.78	12.58
PGSC0003DMT400018285	Potato	endoplasmic reticulum	81.08	12.53
Solyc07g062300.2.1	Tomato	plasma membrane	81.08	12.53
KRH21938	Soybean	vacuole	83.78	12.33
Os02t0234200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	75.68	11.36
OQU84683	Sorghum	golgi	75.68	11.31
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	74.32	11.16
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	74.32	11.16
TraesCS6D01G181800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	74.32	11.16
Zm00001d016228_P001	Maize	plasma membrane	75.68	10.87
HORVU6Hr1G045970.15	Barley	endoplasmic reticulum, plasma membrane	74.32	10.4
KRH27368	Soybean	plastid	55.41	9.56
VIT_01s0026g00330.t01	Wine grape	plasma membrane	62.16	9.37
VIT_14s0066g01590.t01	Wine grape	golgi	60.81	8.96
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	48.65	8.22

Protein Annotations

ArrayExpress:VIT_13s0106g00480	EMBL:FN596257	EnsemblPlants:VIT_13s0106g00480.t01	EnsemblPlantsGene:VIT_13s0106g00480	Gene3D:2.120.10.30	InterPro:6-blade_b-propeller_TolB-like
InterPro:IPR011042	PANTHER:PTHR13833	PANTHER:PTHR13833:SF73	ProteinID:CCB58757	ProteinID:CCB58757.1	UniParc:UPI0002109C4B
UniProt:F6HVP4	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr13:-:10112932..10113156

Molecular Weight (calculated)

8021.4 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.336

Length

74 amino acids

Sequence
(BLAST)

1: MDDKENVYVA DSSNLAIRKI GDSGVTTIVG GKSNVARYGN GPREDAKFSR DFDVVYVRPT CSLLVVDRGN AALR

Best Arabidopsis Sequence Match ( AT3G14860.2 )
(BLAST)

001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.