CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21938	Soybean	vacuole	71.33	60.84
VIT_13s0106g00460.t01	Wine grape	cytosol	19.35	56.08
VIT_13s0106g00480.t01	Wine grape	cytosol	9.56	55.41
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	51.05	45.25
GSMUA_Achr7P13840_001	Banana	golgi	47.09	42.35
AT3G14860.2	Thale cress	plastid, vacuole	48.02	41.78
CDX82461	Canola	endoplasmic reticulum	47.55	41.55
CDX75794	Canola	plastid	47.55	41.38
Bra001570.1-P	Field mustard	plastid	47.32	41.18
Solyc07g062300.2.1	Tomato	plasma membrane	44.29	39.67
PGSC0003DMT400018285	Potato	endoplasmic reticulum	43.36	38.83
Os02t0234200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	43.82	38.13
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	43.12	37.53
TraesCS6D01G181800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	42.89	37.32
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	41.96	36.51
OQU84683	Sorghum	golgi	41.96	36.36
HORVU6Hr1G045970.15	Barley	endoplasmic reticulum, plasma membrane	42.42	34.4
Zm00001d016228_P001	Maize	plasma membrane	40.56	33.79
KRG99307	Soybean	golgi	30.07	25.7
KRH74622	Soybean	plasma membrane	28.21	23.87
KRH69528	Soybean	vacuole	27.74	23.38
KRH45706	Soybean	plasma membrane	22.14	22.57
KRG93349	Soybean	golgi, plasma membrane, vacuole	27.51	22.01
KRH45709	Soybean	endoplasmic reticulum	16.08	17.25

Protein Annotations

EMBL:ACUP02007802	EnsemblPlants:KRH27368	EnsemblPlantsGene:GLYMA_12G231000	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:NHL_repeat	PANTHER:PTHR13833	PANTHER:PTHR13833:SF73
PFAM:PF01436	ProteinID:KRH27368	ProteinID:KRH27368.1	SEG:seg	UniParc:UPI0002948715	UniProt:K7LWI0
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:39088814..39093312

Molecular Weight (calculated)

47167.6 Da

IEP (calculated)

9.885

GRAVY (calculated)

-0.621

Length

429 amino acids

Sequence
(BLAST)

001: MTSPVTTTSP TSSSGTTSTV VPAIARPLIK HLSSLIKWTR STSKTPHSDG NALQFENGYV VETVVEGNKI GVVPYRIRVS GGRNIVWITP PLSQYSRGRL
101: VAGSFQGYTG HVDGKPSDAL FNHPKGITVD DKGNVYVADT QNLAIRKIGD AGVTTIAGGK SNVAGYRDGP SEDAKFSRDE DCDYQSNSIS STDILTVVGA
201: VIVGYATCML QLGFGSTSFS KTQQQPSENQ FKGLASNEKH MPILESSKEE PGWPSFGQLI IDLSKLSLEA LASAFIPSHF RPGNSKRGLK PLNDRLVMPE
301: DDVRPPLVNR QNAQGHTPLT ENRMASQVHT PTTVEKYSEM KPPKIKSSSF KDPSMSSKHR SSKRPEYAEF YERPRHRQRE KSGEVVMGAV GAEAKPVETR
401: VVDHNNKKFD HYRMRTKYAS EETFRFNSQ

Best Arabidopsis Sequence Match ( AT3G14860.2 )
(BLAST)

001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.